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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccctacattctagacaatgtgtactgtgttcgctcgttattttgaatgtaggtgatatactgatatttgagcacacatttttttgttcaatgtttcgcagATTTCTAGTGGAACAATTGTCAAAGGTTAATCCTAGCTGTATGGATCGCGATCAGCGGCTAGCCTTTTGGATTAACTTATACAATGCTTTGATAATGCAT

Basic information

species Zea mays
transcript GRMZM2G165945_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165945_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g05900.1 (Oryza sativa), 3'ss of exon 3
ccctacattctagacaatgtgtactgtgttcgctcgttattttgaatgtaggtgatatactgatatttgagc---acacatttttttgttcaatgtttcgcagATTTCTAGTGGAACAATTGTCAAAGGTTAATCCTAGCTGTATGGATCGCGATCAGCGGCTAGCCTTTTGGATTAACTTATACAATGCTTTGATAATGCAT
 |   || |   |    |    | ||    |  || ||| ||   |  ||     |||  ||| || | ||    ||| ||     ||        ||  ||||||||| ||||||||  | ||||||||||| ||||   ||||| |  | ||| |||||||||||||||||||||| || ||||||||  |||| ||||||
-ctgtcaattacggtgttcctcattgaagaccatctttaattcttac-taatacttatgttga-atgtaagtgtaacaaataaccatgcctttgtatttacagATTTCTTGTGGAACAGCTATCAAAGGTTAACCCTAATAGTATGAACTGTGATGAGCGGCTAGCCTTTTGGATTAATTTGTACAATGCACTGATTATGCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtaggtgatatactgatatttgagcacacatttttttgttcaatgtttcgcagATTTCTAGTGGAACAATTGTCAAAGGTTAATCCTAGCTGTATGGATCGCGATCAGCGGCTAGCCTTTTGGATTAACTTATACAATGCTTTGATAATGCAT
            tactgat  putative branch site (score: 2)
                               atttttttgttcaat  TA-rich tract