1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaatttgttatttggattactcacattttttctaggtacaacgatatagtagcttgtgtcttgttgtttctgtctaaattcagtttgacaaggatattttggcttgaacagGTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTCCTGCGTCCTGGACGTTTAGATAGGAAGATTGAAATTCCGCTACCCAACG
species | Zea mays |
transcript | GRMZM2G165817_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAG GTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTCEST: gi|6445479|gb|AW179397.1|AW179397
genomic: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAGgtaaatttgt ... gcttgaacagGTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTC
EST: TTTGATGAGCTAGGAAAG GTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTCEST: gi|211475170|gb|FL103103.1|FL103103
genomic: TTTGATGAGCTAGGAAAGgtaaatttgt ... gcttgaacagGTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTC
EST: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAG GTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTCEST: gi|113702338|gb|EE679842.1|EE679842
genomic: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAGgtaaatttgt ... gcttgaacagGTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTC
EST: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAG GTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTCEST: gi|7145297|gb|AW506778.1|AW506778
genomic: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAGgtaaatttgt ... gcttgaacagGTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTC
EST: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAG GTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTCEST: gi|211475160|gb|FL103093.1|FL103093
genomic: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAGgtaaatttgt ... gcttgaacagGTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTC
EST: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAG GTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGEST: gi|211475158|gb|FL103091.1|FL103091
genomic: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAGgtaaatttgt ... gcttgaacagGTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGG
EST: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAG GTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTCEST: gi|21432254|gb|BQ547744.1|BQ547744
genomic: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAGgtaaatttgt ... gcttgaacagGTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTC
EST: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAG GTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTCEST: gi|7145298|gb|AW506779.1|AW506779
genomic: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAGgtaaatttgt ... gcttgaacagGTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTC
EST: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAG GTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTCEST: gi|95107783|gb|EB740012.1|EB740012
genomic: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAGgtaaatttgt ... gcttgaacagGTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTC
EST: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATCANCTAGGAAAG GTAAAAATGATCAEST: gi|148950536|gb|EC896111.2|EC896111
genomic: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAGgtaaatttgt ... gcttgaacagGTAAAAATGATCA
EST: CGTTGATGGAGCTCCTTAAC-AATTAGATGGATTTGATGAGCTAGGAAAG GTAAAAATGATCATG
genomic: CGTTGATGGAGCTCCTTAACCAATTAGATGGATTTGATGAGCTAGGAAAGgtaaatttgt ... gcttgaacagGTAAAAATGATCATG
tgtcttgttgtttctgtctaaattcagtttgacaaggatattttggcttgaacagGTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTCCTGCGTCCTGGACGTTTAGATAGGAAGATTGAAATTCCGCTACCCAACG
atatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttgttatttggattactcacattttttctaggtacaacgatatagtagcttgtgtcttgttgtttctgtctaaattcagtttgacaaggatattttggcttgaacagGTAAAAATGATCATGGCCACAAATCGACCTGATGTTCTGGACCCGGCGCTCCTGCGTCCTGGACGTTTAGATAGGAAGATTGAAATTCCGCTACCCAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA