Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcactgttctgtactcttcattcttctgaaccccttaacttgagttgagtgattactcccattccgcacctaaataacttaccatttgtaatattggacatgttcgccaacagGCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCT

Basic information

species Zea mays
transcript GRMZM2G165747_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32849990|gb|CD989671.1|CD989671
EST:     TTGCCGAGGTTAATGCCCTTGCGAAGGCTTTGGCAGGCCAAAAGGATGAG                         GCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCT
genomic: TTGTCGAGGTTAATGCCCTTGCGAAAGCTTTGGCAGGCCAAAAGGATGAGgtatggcact ... tcgccaacagGCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCT
EST: gi|31361660|gb|CD446017.1|CD446017
EST:     TTGTCGAGGTTAATGCCCTTGCGAAGGCTTTGGCAGGCCAAAAGGATGAG                         GCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCT
genomic: TTGTCGAGGTTAATGCCCTTGCGAAAGCTTTGGCAGGCCAAAAGGATGAGgtatggcact ... tcgccaacagGCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCT
EST: gi|31361689|gb|CD446046.1|CD446046
EST:     TTGTCGAGGTTAATGCCCTTGCGAAGGCTTTGGCAGGCCAAAAGGATGAG                         GCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCT
genomic: TTGTCGAGGTTAATGCCCTTGCGAAAGCTTTGGCAGGCCAAAAGGATGAGgtatggcact ... tcgccaacagGCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCT
EST: gi|33101979|gb|CF061939.1|CF061939
EST:     TTGTCGAGGTTAATGCCCTTGCGAAAGCTTTGGCAGGCCAAAAGGATGAG                         GCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCT
genomic: TTGTCGAGGTTAATGCCCTTGCGAAAGCTTTGGCAGGCCAAAAGGATGAGgtatggcact ... tcgccaacagGCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCT
EST: gi|31355054|gb|CD439411.1|CD439411
EST:     TTGTCGAGGTTAATGCCCTTGCGAAGGCTTTGGCAGGCCAAAAGGATGAG                         GCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCT
genomic: TTGTCGAGGTTAATGCCCTTGCGAAAGCTTTGGCAGGCCAAAAGGATGAGgtatggcact ... tcgccaacagGCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattccgcacctaaataacttaccatttgtaatattggacatgttcgccaacagGCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCT
                 aacttac  putative branch site (score: 2)
 atttgtaatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggcactgttctgtactcttcattcttctgaaccccttaacttgagttgagtgattactcccattccgcacctaaataacttaccatttgtaatattggacatgttcgccaacagGCTTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG