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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacgtaagatgaactgtcacggtgcaccagcgaacccccccccccctccctccacaatgctgtggtactgcttttttaatatactctgatttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTCGTCACAATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGG

Basic information

species Zea mays
transcript GRMZM2G164797_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164797_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g35060.1 (Oryza sativa), 3'ss of exon 7
---tacgtaagatgaactgtcacggtgcaccagcgaacccccccccccctccctccacaatgctgtggtactgcttttttaatatactctgatttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTCGTCACAATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGG
   |    |  |||     ||| ||| ||    | | |||         ||| |  ||||||||   | |||   | || |    || |||||| | || ||||| |||||||||||| |||||||||||||||| |||||||||||||| || || |||||||||||||| || ||||||||||||||||||||||||||||
gtatcatcagaatggcgcatcatggttcagt--caaccccttattgtgttccattgacaatgcttctgaactatctgttgatgcaaccctgatt-gcatgcagGACTGGGATCGTCAAGATCCAACACAAATTGTCACGGAGATGTGCGGTTTTGTTACAATCCTTTCTGGGACATTTCTTCTTCACAAGACAAAGGATATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211415280|gb|FL246624.1|FL246624
EST:     ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG                         GATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... ttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
EST: gi|78120467|gb|DV538851.1|DV538851
EST:     ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG                         GATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... ttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
EST: gi|67026855|gb|CO455604.1|CO455604
EST:     ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG                         GATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... ttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
EST: gi|71301104|gb|DR786584.1|DR786584
EST:     TGTAATAATGTTCAAG                         GATGGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGTTTC
genomic: TGTAATAATGTTCAAGgtaacagatt ... ttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
EST: gi|89760200|gb|DY688717.1|DY688717
EST:     ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG                         GATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... ttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccctccacaatgctgtggtactgcttttttaatatactctgatttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTCGTCACAATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGG
                          ttttttaatatactct  TA-rich tract