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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatatcagtgatgcaaacatgtgtttccagaatatggtgttgacaactgttgacattccatgtaagctgatcatctcttctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTA

Basic information

species Zea mays
transcript GRMZM2G164352_T04
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164352_T04 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA02G10790.1 (Glycine max), 3'ss of exon 7
----gtgatatcagtgatgca-----aacatgtgtttccagaatatggtgttgacaactgttgacattccatgtaagctgatcatctcttctttg--gcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTA
     || ||  | | ||||      | ||| |||||      | |    || | || |    | |  | |||   | | ||    | ||||||   ||||||||| || ||||| |||||| |||| ||||| |||||  | ||||| || |||||||||||||| || || || || || ||||| ||||||||||| |
tttaatgctacaactaatgctgtggcagcat-tgtttaacctttttttctttcaaaatttccaagaaactatgcctgtttatgtgtttttctttattgcagGATGCAACAATTGAGCAGCTTCTTCCTATTTTTCTCTCCCTTTTGAAGGATGAATTTCCTGATGTACGCCTAAATATCATAAGCAAGCTTGATCAAGTGA

upper sequence: GRMZM2G164352_T04 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA20G24790.1 (Glycine max), 3'ss of exon 7
-------------gtgatatcagtgatgcaaacatgtgtttccagaatatggtgttgacaactgttgacattccatgtaagctgatcatctcttctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTA
                | |||  |  |  |  |   ||||     | ||  || ||      |||  |  | |     |     | | | ||||| ||| ||||| || || ||||| |||||| |||| |||||||| ||  | ||||| || ||||||||||| || || || ||||| |||||||| ||||||||||| |
taaaagataatcaacaaaatctattttctaggctattgttatagtagta--gttttatttggtgtaaatgtgcatctcagttctaccttatcttcattg-cagGAAGCAACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTTGAAGGATGAATTTCCTGACGTACGCCTAAACATTATCAGCAAGCTTGATCAAGTGA

upper sequence: GRMZM2G164352_T04 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA09G31760.1 (Glycine max), 3'ss of exon 7
---------gtgatatcagtgatgcaaacatgtgtttccagaat-atggtgttgacaactgt-tgacattccatgtaagctgatcatctcttctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTA
          ||| |    |       | | ||  ||| |   | |  | |  ||    ||       || | | |||  || |  | |  |  ||| |||||||| || || || || ||| | || |||||||| ||| | ||||||||||| |||||||||||  | || || || |||||||| ||||||||||| |
cctaaactcttgaaactgtttccatgtaaaagtaattcaactcttaaagagaggatggatgcaccttcttgcttttaaaatgtttttgtggtggttg-cagGATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGA

upper sequence: GRMZM2G164352_T04 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G42250.1 (Glycine max), 3'ss of exon 7
gtgatatcag-tgatgca-aacatgtgtttccagaatatggtgttgacaactgttgacattccatgtaagc-tga---tcatctcttctttg--------gcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTA
   |||  || |  | || || || | ||| |      |  |  ||| | | || |   ||   |||||   |||   |||  ||| | ||         |||||| || || ||||| |||||| |||| |||||||| ||  | ||||| || |||||||| || || || || ||||| |||||||| ||||||||||| |
---ataaaagatagtacacaaaatctattttctaggc-taattgtgatagcagtagttttttggtgtaaatgtgaatctcagttctaccttatcttcattgcagGAAGCAACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTTGAAGGATGAATTTCCCGACGTGCGCCTAAACATTATCAGCAAGCTTGATCAAGTGA

upper sequence: GRMZM2G164352_T04 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA07G10000.1 (Glycine max), 3'ss of exon 6
--------gtgatatcagtg--atgcaaacatgtgtt---tccagaatatggtgttgacaactgttgacattccatgtaagctgatcatctcttctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTA
         ||| |    |   ||| |||  |   |    ||   || |  |  ||||      ||  |  |   | |||    ||  |        | |||||||||||| ||||| || ||| | || |||||||| ||| | ||||||||||| |||||||||||  | || || || |||||||| ||||||||||| |
ctaaactcttgaaactgttcccatgtaaaagtaactcaactcttaaagagaggattgatgcaccttttcgct---tttaaaaacatttttgtggtggttgcagGATGCTACAATTGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGA

upper sequence: GRMZM2G164352_T04 (Zea mays), 3'ss of exon 7
lower sequence: AT1G13320.2 (Arabidopsis thaliana), 3'ss of exon 7
-----------gtgatatcagtgatgcaaac-atgtgtttccagaatatggtgttgacaactgttgacattccatgtaagctgatcatctcttctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTA
              |||| ||  |  |  || |||| |||| | |  | | | || |     | |       | | |||  ||    |    |   |  |||||||| || ||||| || ||| ||||||| || || ||| | ||||||||||||||||||||||| ||  | ||||| |||||||||||||| ||||| |
cgcaacaataatctatataagaaaacctcactatgtttttctaca-caagatattta-gttggattttgcagcttttaacttggcattgatattcatttcagGATGCAACAATTGAGCATCTTCTTCCAATCTTTCTTTCTCTATTGAAAGACGAATTTCCTGATGTACGCTTAAACATTATCAGCAAACTTGACCAAGTGA

upper sequence: GRMZM2G164352_T04 (Zea mays), 3'ss of exon 7
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 3'ss of exon 8
-----------------gtgatatcagtgatgcaaacatgtgtttccagaatatggtgttgacaactgttgacattccatgtaagctgatcatctcttctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTA
                  ||| ||     ||| |   || | | ||||     |||| |||    |||||     |  |  |||  |    |||| |  |     |||| || || || || || ||| | || |||||||| ||| || | ||||| || ||||||||||| ||||| || || |||||||| ||||||||||| |
tttggtagattttttccctgagatgttctatggagtgatctatatcca----ctggt-ttggtctctgtttgtcatttaattaatata--tatctttattcctatagGACGCAACAATAGATCAACTTCTGCCCATTTTCCTTTCTCTGCTTAAAGATGAGTTTCCTGATGTCCGACTGAATATTATCAGCAAGCTTGATCAAGTAA

upper sequence: GRMZM2G164352_T04 (Zea mays), 3'ss of exon 7
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 3'ss of exon 6
---gtgatatcagtgatgcaaacatgt-gtttccagaatatggtgttgacaac----tgttgacattccatgt---aagctgatcatctcttctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTA
    |||| |||   || ||||  | | |       | | |  |||| | | |    |  |   |||  || |   ||  |  || |   | ||   ||||||||| || ||||| || ||| |||||||||| || ||| | ||||| || || ||||||||||| ||||| || || || ||||| ||||||||| | |
caattgatctca-caattcaaatttattgggagtgcatttttctgttaagatcatgtttcttgaattggatttctgaactttgtcttggttgctgatgcagGATGCAACAATTGATCAACTTCTTCCAATTTTTCTTTCTCTTTTGAAGGATGACTTTCCTGATGTACGACTAAATATCATTAGCAAGCTTGATCAAATAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156353|gb|DY401142.1|DY401142
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|67016540|gb|CO445289.1|CO445289
EST:     GTTCAGCTTTACCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|87157118|gb|DY401907.1|DY401907
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|26558526|gb|CA830761.1|CA830761
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|67017790|gb|CO446539.1|CO446539
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|32933390|gb|CF038202.1|CF038202
EST:     GGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|211403483|gb|FL417168.1|FL417168
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|22546073|gb|BU098394.1|BU098394
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|31349427|gb|CD433784.1|CD433784
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAA                         GATGCTACCAT
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCAT
EST: gi|31356642|gb|CD440999.1|CD440999
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGT-CCAATTTTTCCTCTC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTT-CCTCTC
EST: gi|42491785|gb|CK700831.1|CK700831
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|23357737|gb|BU645386.1|BU645386
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|67022121|gb|CO450870.1|CO450870
EST:     TATGGGCATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: TATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|211315613|gb|FL415838.1|FL415838
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|26560084|gb|CA832319.1|CA832319
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|67039515|gb|CO465770.1|CO465770
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|31355734|gb|CD440091.1|CD440091
EST:     GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
EST: gi|13315895|gb|BG410243.1|BG410243
EST:     G-TCAGCTTTAGCCTCAG-GATTATGGGAATGGCTCCTGTACTGGGAAAG                         GATGCTACCATTGAACAGC-TGTTCCAATTTTCCTCTCTTTGTTGAAAGAC
genomic: GTTCAGCTTTAGCCTCAGTGATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtgttgacaactgttgacattccatgtaagctgatcatctcttctttggcagGATGCTACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTA
                                     tcatctcttcttt  CT-rich tract