1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aacaattaatatacggatatcaggattacgcgtagttatttattagcttattttctgtagctgttcactgtctggactaatgtttttaaattgcaaacagAGGACAGAGGTTTATGAATACGCGAAGGTGCTTGGTAATTCTCAGTATATCCTACTACCCTTTCAGCCATATAAGCTGATATATGCATACATGCTTGTTG
species | Zea mays |
transcript | GRMZM2G163277_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGATCACTTGAAGTGTCCTCGAACATTTGCCAGCCCTGAAGCCATTCAG AGGACAGAGGTTTATGAATACGCGAAGGTGCTTGGTAATTCTCAGTATATCEST: gi|71438020|gb|DR819070.1|DR819070
genomic: CAGATCACTTGAAGTGTCCTCGAACATTTGCCAGCCCTGAAGCCATTCAGgtttggtact ... ttgcaaacagAGGACAGAGGTTTATGAATACGCGAAGGTGCTTGGTAATTCTCAGTATATC
EST: CAGATCACTTGAAGTGTCCTCGAACATTTGCCAGCCCTGAAGCCATTCAG AGGACAGAGGTTTATGAATACGCGAAGGTGCTTGGTAATTCTCAGTATATC
genomic: CAGATCACTTGAAGTGTCCTCGAACATTTGCCAGCCCTGAAGCCATTCAGgtttggtact ... ttgcaaacagAGGACAGAGGTTTATGAATACGCGAAGGTGCTTGGTAATTCTCAGTATATC
gcttattttctgtagctgttcactgtctggactaatgtttttaaattgcaaacagAGGACAGAGGTTTATGAATACGCGAAGGTGCTTGGTAATTCTCAGTATATCCTACTACCCTTTCAGCCATATAAGCTGATATATGCATACATGCTTGTTG
gactaat putative branch site (score: 43)
actaatgtttttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaattaatatacggatatcaggattacgcgtagttatttattagcttattttctgtagctgttcactgtctggactaatgtttttaaattgcaaacagAGGACAGAGGTTTATGAATACGCGAAGGTGCTTGGTAATTCTCAGTATATCCTACTACCCTTTCAGCCATATAAGCTGATATATGCATACATGCTTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttt