1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gggatttaaacccacccaatcccactcaatccacatggattgagagctaaccaaacaagccctaatttggctgcaatcctttcacttgtcaagggtgaagGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCTGCTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAG
species | Zea mays |
transcript | GRMZM2G163159_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG GGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCTEST: gi|84970115|gb|DV171511.2|DV171511
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... aagggtgaagG-T------CGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
EST: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCCCTATCAGTAATCGAGGGTGAAGEST: gi|110214716|gb|EC896613.1|EC896613
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATC------G-AGgtacgaagtc ... aagg
EST: GAGGCGCCTTTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG GGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCTEST: gi|78122235|gb|DV540619.1|DV540619
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... aagggtgaagG-T------CGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
EST: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG GTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCTGCTGGTG
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... aagggtgaagGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCTGCTGGTG
gctaaccaaacaagccctaatttggctgcaatcctttcacttgtcaagggtgaagGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCTGCTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAG
taattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggatttaaacccacccaatcccactcaatccacatggattgagagctaaccaaacaagccctaatttggctgcaatcctttcacttgtcaagggtgaagGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCTGCTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAG
- - - - - -ccaccca
- - - - - - - - - - -ccactca
- - - - - - - - - - - - - - - -cacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgcaa