1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcgtgattactgtgatatctacatcagggcaaatattggactagaggctgaccgattctcaattgatttaattgttcttctgctctttgttatgtcccagAACCTTGCTGAAGAGGAGCCAGAAAAGTACCAGAGCCACTTCAGTGCGTACATTAAGAAGGGAGTTGAGGCTGATGAAATAGAAGCGCTGTACAAGAAGG
species | Zea mays |
transcript | GRMZM2G163081_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCACAGCGAGAAGAGGTTTGCTGGATTCAAGAAG AACCTTGCTGAAGAGGAGCCAGAAAAGTACCAGAGCCACTTCAGTGCGTACEST: gi|60351790|gb|DN218763.1|DN218763
genomic: CTCACAGCGAGAAGAGGTTTGCTGGATTCAAGAAGgacgacaagc ... tatgtcccagAACCTTGCTGAAGAGGAGCCAGAAAAGTACCAGAGCCACTTCAGTGCGTAC
EST: TTGCT-GATTACATGAAG ACCCTTGCTGAAGAGGAGCCAGAAAAGTCCCAGAGCCACTTCAGTGCGTA
genomic: TTGCTGGATT-CAAGAAGgacgacaagc ... tatgtcccagAACCTTGCTGAAGAGGAGCCAGAAAAGTACCAGAGCCACTTCAGTGCGTA
ggctgaccgattctcaattgatttaattgttcttctgctctttgttatgtcccagAACCTTGCTGAAGAGGAGCCAGAAAAGTACCAGAGCCACTTCAGTGCGTACATTAAGAAGGGAGTTGAGGCTGATGAAATAGAAGCGCTGTACAAGAAGG
ttcttctgctctttgt CT-rich tract
aattgatttaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgtgattactgtgatatctacatcagggcaaatattggactagaggctgaccgattctcaattgatttaattgttcttctgctctttgttatgtcccagAACCTTGCTGAAGAGGAGCCAGAAAAGTACCAGAGCCACTTCAGTGCGTACATTAAGAAGGGAGTTGAGGCTGATGAAATAGAAGCGCTGTACAAGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - -tactgtg
- - - - - - - - - ctacatc
- - - - - - - - - - - - - - - - - - - - - -gaggctg