1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctgaacttaatgtttgtccccgaaaattatcttgtaaccttgtctgcagcatactgtatcttacaaagttcatcgctattgctgttccatggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAGATGATGCTAGAGCAGCAGTGCATACCCGGGGCAGAAAAGGCGCAGGATG
species | Zea mays |
transcript | GRMZM2G162409_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAG ATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAGEST: gi|9742722|gb|BE518870.1|BE518870
genomic: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAGgtactattac ... tggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAG
EST: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAG ATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAGEST: gi|37386226|gb|CF630297.1|CF630297
genomic: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAGgtactattac ... tggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAG
EST: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAG ATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAGEST: gi|51592708|gb|CV071854.1|CV071854
genomic: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAGgtactattac ... tggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAG
EST: CACTTAGGCTTCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAG ATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAGEST: gi|13149966|gb|BG320288.1|BG320288
genomic: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAGgtactattac ... tggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAG
EST: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAG ATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAGEST: gi|71426491|gb|DR807541.1|DR807541
genomic: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAGgtactattac ... tggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAG
EST: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAG ATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAG
genomic: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAGgtactattac ... tggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAG
tgcagcatactgtatcttacaaagttcatcgctattgctgttccatggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAGATGATGCTAGAGCAGCAGTGCATACCCGGGGCAGAAAAGGCGCAGGATG
atcttac putative branch site (score: 3)
aattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgaacttaatgtttgtccccgaaaattatcttgtaaccttgtctgcagcatactgtatcttacaaagttcatcgctattgctgttccatggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAGATGATGCTAGAGCAGCAGTGCATACCCGGGGCAGAAAAGGCGCAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG