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gtatgtttctaacctaatatatgatttacagagctcttttcgttggtgggacagcacttctaactttgagttgtgtcattctaatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAATATCTATCAATGATCTTGTCATCAAG
species | Zea mays |
transcript | GRMZM2G161969_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAA GTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAATEST: gi|32932090|gb|CF036902.1|CF036902
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAAgtatgtttct ... taatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAA GTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAATEST: gi|32933945|gb|CF038757.1|CF038757
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAAgtatgtttct ... taatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAA GTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAATEST: gi|21809700|gb|BQ668018.1|BQ668018
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAAgtatgtttct ... taatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAA GTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAATEST: gi|32930018|gb|CF034830.1|CF034830
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAAgtatgtttct ... taatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAA GTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAATEST: gi|5343148|gb|AI795333.1|AI795333
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAAgtatgtttct ... taatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: TACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAA GTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAATEST: gi|32934396|gb|CF039208.1|CF039208
genomic: TACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAAgtatgtttct ... taatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAA GTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAATEST: gi|22472155|gb|BU036635.1|BU036635
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAAgtatgtttct ... taatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAA GTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAATEST: gi|20802898|gb|BQ293948.1|BQ293948
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAAgtatgtttct ... taatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAA GTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAATEST: gi|20208122|gb|BQ134196.1|BQ134196
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAAgtatgtttct ... taatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAA GTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAAgtatgtttct ... taatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
ttttcgttggtgggacagcacttctaactttgagttgtgtcattctaatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAATATCTATCAATGATCTTGTCATCAAG
tcattct CT-rich tract
attctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttctaacctaatatatgatttacagagctcttttcgttggtgggacagcacttctaactttgagttgtgtcattctaatccacagGTTGCGAGGTGAACTGAATCCACTGCAGGATGCTTCTGGTGGAAAGAAAATATCTATCAATGATCTTGTCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA