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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaggaccctatattgcttatataactcgtgacagtgtgtgcggtactaaaattaattatgaaaaaaactgatctttcacttctgatgccctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGGATTCTCGTGTGACCATGAATTCTAAATGTACATAAAAGTCTGGCGGAAC

Basic information

species Zea mays
transcript GRMZM2G161418_T06
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91052132|gb|EB162550.1|EB162550
EST:     TTCGAAAACATATATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
genomic: TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
EST: gi|18163021|gb|BM332860.1|BM332860
EST:     TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
genomic: TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
EST: gi|8930534|gb|BE225298.1|BE225298
EST:     TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTTTTCAAATTACAAGCTTCCTCGAGG
genomic: TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
EST: gi|32914682|gb|CF019494.1|CF019494
EST:     TTTGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
genomic: TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
EST: gi|149110160|gb|EE293976.2|EE293976
EST:     AGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
genomic: AGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
EST: gi|211401652|gb|FL441809.1|FL441809
EST:     TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
genomic: TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
EST: gi|113613005|gb|DW775593.1|DW775593
EST:     TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTCTTCAAATTA
genomic: TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaaaattaattatgaaaaaaactgatctttcacttctgatgccctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGGATTCTCGTGTGACCATGAATTCTAAATGTACATAAAAGTCTGGCGGAAC
                                         tgccctcttt  CT-rich tract
     aattaattatgaaaaa  TA-rich tract