Sequence
atgc intronic sequence ATGC exonic sequencegtatgtccaaggatggtttattttatcaccacagtaattcttttaccctttttgtctgcattcttggataatgacatttttcatttgttttatagTACGAACCAGAACTCTTTCCTGGCCTTATCTATCGGATGAAACAACCAAAGATTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G161418_T05 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 3'ss of exon 7
gtatgtccaaggatggtttattttatcaccacagtaattcttttaccctttttgtctgcattcttggataatgacatttttcatttgtttta-tagTACGAACCAGAACTCTTTCCTGGCCTTATCTATCGGATGAAACAACCAAAGATTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAA
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gtaagttgagtccttgcatgcctttttaggacg-----cctttcacatttgttatgt-tgttctt-----atgtcctgtgccttttgtgttaacagTATGAGCCAGAACTCTTTCCTGGTCTGATATATCGGATGAAGCAACCAAAGATTGTTCTTCTGATTTTTGTTTCAGGCAAGATTGTTTTGACCGGAGCAA
upper sequence: GRMZM2G161418_T05 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 3'ss of exon 6
gtatgtccaaggatggtttattttatcaccacagtaattcttttaccctttttgtctgcattcttggataatgacatttttcatttgttttatagTACGAACCAGAACTCTTTCCTGGCCTTATCTATCGGATGAAACAACCAAAGATTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAA
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gtaagttgaatccttgcatgtttttttagga---tatttctttcacatatgttatgc-tattctc-----atgtcttgtgccttttgtcttccagTATGAGCCTGAACTCTTTCCTGGTCTGATATATCGGATGAAGCAACCGAAGATTGTTCTTCTGATTTTTGTTTCAGGCAAGATTGTTTTGACCGGAGCAA
upper sequence: GRMZM2G161418_T05 (Zea mays), 3'ss of exon 7
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 3'ss of exon 7
----gtatgtccaaggatggtttattttatcaccacagtaattcttttaccctttttgtctgcattcttggat--aatgacatttttcatttgttttatagTACGAACCAGAACTCTTTCCTGGCCTTATCTATCGGATGAAACAACCAAAGATTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAA
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aaatttaaattgaatcattttaaaaaaaatcatgtaaatgttgtctgtgttctctac-tgtgccttattgtattgaatatagtttggattttgttgggcagTATGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7137809|gb|AW499281.1|AW499281EST: TCCAATTAGGCTTGAGGGCCTTGCATATTCTCATGGTGCCTTCTCAAGT TACGAACCAGAACTCTTTCCTGCCCTTATCTATCGGATGAAACAACCAAAG
genomic: TCCAATTAGGCTTGAGGGCCTTGCATATTCTCATGGTGCCTTCTCAAGTgtatgtccaa ... tgttttatagTACGAACCAGAACTCTTTCCTGGCCTTATCTATCGGATGAAACAACCAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttaccctttttgtctgcattcttggataatgacatttttcatttgttttatagTACGAACCAGAACTCTTTCCTGGCCTTATCTATCGGATGAAACAACCAAAGATTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAA
tttttcatttgtttt CT-rich tract
ataatgacatttttca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtccaaggatggtttattttatcaccacagtaattcttttaccctttttgtctgcattcttggataatgacatttttcatttgttttatagTACGAACCAGAACTCTTTCCTGGCCTTATCTATCGGATGAAACAACCAAAGATTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA