1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttggttataaagctaagcgaaatcgctttggaagcaagttgatgaattctggatctgatgcattctgttcatgtgttgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTG
species | Zea mays |
transcript | GRMZM2G159369_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|60349176|gb|DN216149.1|DN216149
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|33101695|gb|CF061655.1|CF061655
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: CCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|148932685|gb|EC876639.2|EC876639
genomic: CCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAG-GTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|86466435|gb|DY232805.1|DY232805
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|4647206|gb|AI622281.1|AI622281
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: TGTGGCACCAGCCGGGATCCAAAGGGCCNCCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|32857597|gb|CD997278.1|CD997278
genomic: TGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCGCCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|37380832|gb|CF627255.1|CF627255
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGTTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|60399092|gb|DN231906.1|DN231906
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: CGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTTTCAATGCTEST: gi|24767522|gb|CA402664.1|CA402664
genomic: CGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: CGGGATCCAAAGGCCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|4646531|gb|AI491677.2|AI491677
genomic: CGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: CTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|37379835|gb|CF626683.1|CF626683
genomic: CTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|32940600|gb|CF045419.1|CF045419
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|78545093|gb|DV622591.1|DV622591
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|20513042|gb|BQ280228.1|BQ280228
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATAAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|31558598|gb|CD527810.1|CD527810
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|60350336|gb|DN217309.1|DN217309
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|113854582|gb|DW976283.1|DW976283
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCEST: gi|33091270|gb|CF051264.1|CF051264
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGC
EST: AGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|60356885|gb|DN223858.1|DN223858
genomic: AGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|148961931|gb|EE012723.2|EE012723
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCTTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|37388199|gb|CF631306.1|CF631306
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|101386448|gb|EB815241.1|EB815241
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: CTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|71326463|gb|DR799911.1|DR799911
genomic: CTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|14244876|gb|BG842814.2|BG842814
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|32934912|gb|CF039724.1|CF039724
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATCAG-AGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|9254367|gb|BE344835.1|BE344835
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|149096331|gb|EE182050.2|EE182050
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|67024988|gb|CO453737.1|CO453737
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|14244939|gb|BG842877.2|BG842877
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|21828690|gb|BQ703374.1|BQ703374
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: TGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|60358667|gb|DN225640.1|DN225640
genomic: TGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
aagcaagttgatgaattctggatctgatgcattctgttcatgtgttgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTG
atctgat putative branch site (score: 4)
atgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttataaagctaagcgaaatcgctttggaagcaagttgatgaattctggatctgatgcattctgttcatgtgttgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG