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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcacgttctttacagtcatgttctggccttctgggttatgaaatgactaagataagatagtgacggtatagcttacctgacaaggatctcaaattattttacttaatcctccatagttgcaaaatgtccttaatacaaagagtcttcttcaaccagATACTTGGTAGTGAAAATGGCCCCCTTTGGAAAGACTACTTCGAAGGTGGGGCTACCTGGGCTTTTGATGTCGGCTCTCAGTCTATGACATGTCCAATCA

Basic information

species Zea mays
transcript GRMZM2G158281_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158281_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os11g06010.1 (Oryza sativa), 3'ss of exon 7
gtatgcacgttctttacagtcatgttctggccttctgggttatgaaatgactaagataagatagtgacggtatagcttacctgacaaggatctcaaattattttacttaatcctccatagttgcaaaatgtccttaatacaaagagtcttcttcaaccagATACTTGGTAGTGAAAATGGCCCCCTTTGGAAAGACTACTTCGAAGGTGGGGCTACCTGGGCTTTTGATGTCGGCTCTCAGTCTATGACATGTCCAATCA
                                      ||   || ||   |        ||        |||||| ||  |||  |||  |  ||||||| |     ||| ||   |||||| ||||      | | ||      |  | ||||| ||||| ||||| | ||| ||||| ||  ||||||||||||| || |||||||| || || ||||| |||||||| ||||||||||||||||||||||||||||
--------------------------------------gtatggacatcttttttgctctatcagttgattatagcatagatga--aggcacaaaaattatat-----aattctt-gtagttggaaaaatctacttacactgttgat--tattcaagcagATTCTTGGCAATGAGAATGGTCCTGTTTGGAAAGACTATTTTGAAGGTGGTGCAACTTGGGCATTTGATGTTGGCTCTCAGTCTATGACATGTCCAATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaatcctccatagttgcaaaatgtccttaatacaaagagtcttcttcaaccagATACTTGGTAGTGAAAATGGCCCCCTTTGGAAAGACTACTTCGAAGGTGGGGCTACCTGGGCTTTTGATGTCGGCTCTCAGTCTATGACATGTCCAATCA
                          ccttaat  putative branch site (score: 4)
                                         tcttcttc  putative PPT
                            ttaatacaaa  TA-rich tract