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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctagattttccatcagactatcggttgttgttgcaagtgcttgttcctttctcatgtttttgtttcaatgtttgtttattacttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTCTTTTCTACTGCAAATGAAAGCATAGGAGTAGTAAGTGGTTATCCTGGAT

Basic information

species Zea mays
transcript GRMZM2G158162_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158162_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os07g48200.1 (Oryza sativa), 3'ss of exon 7
gtaagctagattttcca--------tcagactatcggttgttgttgcaagtgcttgttcctttctcatgtttttgtt------tcaatgtttgtttattacttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTCTTTTCTACTGCAAATGAAAGCATAGGAGTAGTAAGTGGTTATCCTGGAT
||||| ||||||||||         ||  ||||     | ||  ||||| |||||||| |  | || | |||   ||      ||||||||| | | |||||| |  ||||||||||||||||||||||||||| || |||||| ||||  | || ||| | ||||||| | ||||||| |   ||| | |||||||||||||| | ||||
gtaagttagattttcctaacattcttcctactaatttattttcctgcaaatgcttgtttcactttcctttttcccttcctttatcaatgtttttatgttacttctgtacagGACTCACAGATTTCAGCTATTGCCAACGGTTCCATTCTTGGGGATACATTATTTTCTAGTACAAATGAGAATTTAGCAATAGTAAGTGGTTATTCAGGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5268958|gb|AI770922.1|AI770922
EST:     GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGGCAGTCTGCCA                         GACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC
genomic: GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaagctaga ... ttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC
EST: gi|67034443|gb|CO462993.1|CO462993
EST:     GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCA                         GACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC
genomic: GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaagctaga ... ttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC
EST: gi|67040653|gb|CO466908.1|CO466908
EST:     -AAACTTGTTATGGGCTTTCG-AANGGC-ACAAATACTGTCAGTCTGCCA                         GACTCACAGATTTCAGCTATTGCGAATGGGTCCCTTCTCAGTGAGAC
genomic: GAAACTTGTTATGGGCTTTCGGAA-GGCCACAAATACTGTCAGTCTGCCAgtaagctaga ... ttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGAC
EST: gi|13150757|gb|BG321079.1|BG321079
EST:     GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCA                         GACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC
genomic: GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaagctaga ... ttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC
EST: gi|6564045|gb|AW231667.1|AW231667
EST:     GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCA                         GACTCACAGATTTCAGCTATTGCAAATGGTTCCCTTCTCAGTGAGACACTC
genomic: GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaagctaga ... ttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgttcctttctcatgtttttgtttcaatgtttgtttattacttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTCTTTTCTACTGCAAATGAAAGCATAGGAGTAGTAAGTGGTTATCCTGGAT
                                         ttactttt  CT-rich tract
                             aatgtttgtttattac  TA-rich tract