Sequence
atgc intronic sequence ATGC exonic sequence...ttaaatttataatgtttgtcttaggaaaaacctagttaatatatttatgatcagaggtagtgactaatagatgattgacctatcaatttaatatgttcagGTGACAACTTCAATTTACAATCTCATATTGGGCAAGCTATATTGCGATCACTATGGTACTATGCGCATACAAGGTAATTGTGAATATTCATGTAAGCTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G157172_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g49770.2 (Oryza sativa), 3'ss of exon 6
ttaaatttataatgtttgtcttaggaaaaacctagttaatatatttatgatcagaggtagtgactaatagatgattgacctatcaatttaatatgttcagGTGACAACTTCAATTTACAATCTCATATTGGGCAAGCTATATTGCGATCACTATGGTACTATGCGCATACAAGGTAATTGTGAATATTCATGTAAGCTTA
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------gtaccat-tacatatttagcaagaagtggttag---atctttggtctgtggaaataattcac------ttga------aatattctat-ctcagGTGACAACTTCCATTTACAATCTCATATTGGGTAAACTGTATTGTGATCATTATGGTACTATGCGAATACAAGGCAATAATGAATATTCGTGCAAGTTGA
upper sequence: GRMZM2G157172_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv18s0001g03790.t01 (Vitis vinifera), 3'ss of exon 6
ttaaatttataatgtttgtcttaggaaaaacctagttaatatatttatgatcagaggtagtgactaatagatgattgacctatcaatttaatatgttcagGTGACAACTTCAATTTACAATCTCATATTGGGCAAGCTATATTGCGATCACTATGGTACTATGCGCATACAAGGTAATTGTGAATATTCATGTAAGCTTA
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--------------------gtatggagcaaatgattggaaagtgtttattctcttttagattccaatttaaaattggactttc--ttctat-----cagGTAACAACATCAATATACAATCTTATATTGGGAAAGTTGTACTGTGATCACTATGGTACAATGCGCATACAGGGAAATCGTGAGTATTCATGTAAGCTGA
upper sequence: GRMZM2G157172_T01 (Zea mays), 3'ss of exon 7
lower sequence: EFJ15167 (Selaginella moellendorffii), 3'ss of exon 6
ttaaatttataatgtttgtcttaggaaaaacctagttaatatatttatgatcagaggtagtgactaatagatgattgacctatcaatttaatatgttcagGTGACAACTTCAATTTACAATCTCATATTGGGCAAGCTATATTGCGATCACTATGGTACTATGCGCATACAAGGTAATTGTGAATATTCATGTAAGCTTA
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-----------------------------------------------------gtagttcaaacggcatttggattggtctaacaccgtacttga--cagGTGACCACATCAATTTACAATCTCATACTAGGAAAGCTTTACTGTGATCACTACGGCACAATGCGCATTCAAGGAAACCGCGACATGTCCTGCAAGCTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgatcagaggtagtgactaatagatgattgacctatcaatttaatatgttcagGTGACAACTTCAATTTACAATCTCATATTGGGCAAGCTATATTGCGATCACTATGGTACTATGCGCATACAAGGTAATTGTGAATATTCATGTAAGCTTA
tatcaatttaatatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttaaatttataatgtttgtcttaggaaaaacctagttaatatatttatgatcagaggtagtgactaatagatgattgacctatcaatttaatatgttcagGTGACAACTTCAATTTACAATCTCATATTGGGCAAGCTATATTGCGATCACTATGGTACTATGCGCATACAAGGTAATTGTGAATATTCATGTAAGCTTA
- - - - - - tgtttgt
- - - - - - - - - - - aggaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgattg