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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttcgggtcttggggattcattgatacattttgttggatcatgtttttaaaggatcttatacaaatagctaaataactttagaattaattgttttgcagCCCAACATGCTAGTTATTGATCTGGAAAAGTTTGCCTCTGAATCAACAG

Basic information

species Zea mays
transcript GRMZM2G156238_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156238_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g20970.1 (Oryza sativa), 3'ss of exon 8
------gcttcgggtcttggggattcattgatacattttgttggatcatgtttttaaaggatcttatacaaatagctaaataacttta-gaattaattgttttgcagCCCAACATGCTAGTTATTGATCTGGAAAAGTTTGCCTCTGAATCAACAG
      |  | ||||    || |||   ||||    ||| |||||  || ||| |    | |||||  |||  ||  |||||| |||  ||| |  || |||||||||| || ||||||||||||||  ||||||||||||| || ||||||||||
gagaatggatagggtt---ggcattagctgatggtgtttcttggacaatttttgttctag-tcttaagcaacaag--aaataattttgtgaaattgtt-ttttgcagCCTAATATGCTAGTTATTGACTTGGAAAAGTTTGCATCGGAATCAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaaaggatcttatacaaatagctaaataactttagaattaattgttttgcagCCCAACATGCTAGTTATTGATCTGGAAAAGTTTGCCTCTGAATCAACAG
                                            ttgtttt  CT-rich tract
            ttatacaaatagctaa  TA-rich tract