Sequence
atgc intronic sequence ATGC exonic sequencegtatgcctataaaagttgttttgttgaaaatgttgttccatgcaattcaaacttatattttattttctggtgtttagGTGGGCATCAGATAATGATTTTACTGGGGAAATACCAGATTATATTGGGAGCTGGACTAATTTAACAGAACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G155837_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g52630.1 (Oryza sativa), 3'ss of exon 6
gtatgcctataaaa---gttgttttgttgaaaatgttgttccatgcaattcaaacttatattttat------tttctggtgtttagGTGGGCATCAGATAATGATTTTACTGGGGAAATACCAGATTATATTGGGAGCTGGACTAATTTAACAGAACT
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gtaggcctctaatatacgtattcttattgaaattaatctcccataccattaaatcttatgggttgtatatccttttcgttgtttagGTGGGCATCAGATAATAATTTTACTGGGAAAATACCAGATTATATCGGGAGCTGGA---ATTTAACAGACTT
upper sequence: GRMZM2G155837_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g52640.3 (Oryza sativa), 3'ss of exon 7
--gtatgcctataaaagtt---gttttgttgaaaatgttgttccatgc----aattcaaacttatattttat---tttctggtgtttagGTGGGCATCAGATAATGATTTTACTGGGGAAATACCAGATTATATTGGGAGCTGGACTAATTTAACAGAACT
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gtataaacttacaaaatatttggtatagctgacattaatgttccattccataaattaaatcttatgtcctgtatcttttacttgttcagGTGGGCATCGGATAATAATTTTACTGGGCAAATACCGGATTATATTGGGAGCTGGA---ATTTAACAGACCT
upper sequence: GRMZM2G155837_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 3'ss of exon 7
gtatgcctataaaa----gttgttttgttgaaaatgttgttccatgcaattcaaacttatattttat------tttctggtgtttagGTGGGCATCAGATAATGATTTTACTGGGGAAATACCAGATTATATTGGGAGCTGGACTAATTTAACAGAACT
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gtacgactacaaaaaaatgtcttcttgttggcattaatgttccatgccattaaaaattgtttcttatatgtccttttatttgttcagGTGGGCATCAGATAACAATTTTACTGGACAAATACCAGATTATATTGGGAGCTGGA---ATTTGACAGACCT
upper sequence: GRMZM2G155837_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 3'ss of exon 7
gtatgcctataaaagt-----tgttttgttgaaaatg-ttgttccatgcaattcaaacttatattttattttctggtgttt--agGTGGGCATCAGATAATGATTTTACTGGGGAAATACCAGATTATATTGGGAGCTGGACTAATTTAACAGAACT
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gtaggattacaaaaggatgtgtttcttgttgacattaattcttccgtgccattaaacattgtttcttatcctcctatttcttcagGTGGGCATCAGATAATGATTTTACTGGACAAATACCAGATTATATCGGGAACTGGA---ATTTGACAGACCT
upper sequence: GRMZM2G155837_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g52606.2 (Oryza sativa), 3'ss of exon 6
--gtatgcctataaaag----ttgttttgttgaaaatgttgttccatgcaattcaaacttatattttattttctggtgtttagGTGGGCATCAGATAATGATTTTACTGGGGAAATACCAGATTATATTGGGAGCTGGACTAATTTAACAGAACT
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gtatagacctttcaaaagacatgttcttgttgacattaatgtcagattccatg-atatctgtgtatccttttact-tgttcagGTGGGCATCGGATAATAATTTTACTGGACAAATACCAGATTACATTGGGAGCTGGA---ATTTAACAGACCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgaaaatgttgttccatgcaattcaaacttatattttattttctggtgtttagGTGGGCATCAGATAATGATTTTACTGGGGAAATACCAGATTATATTGGGAGCTGGACTAATTTAACAGAACT
ttttattttct CT-rich tract
atgcaattcaaactta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcctataaaagttgttttgttgaaaatgttgttccatgcaattcaaacttatattttattttctggtgtttagGTGGGCATCAGATAATGATTTTACTGGGGAAATACCAGATTATATTGGGAGCTGGACTAATTTAACAGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA