1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacagtatcattgcgcaatggttgtcgtatgtttgatttagaagatatgccataatccactatgtaacttatgatcaatctaaagtttaggctccattgtgcccagtttacgtgaaaaccgacacattctcattttatccttttctactccattgtattgagtctcattcggtctctctcttgcagCGGCTGCTTGGGATACAGATGGCGACATTCCGTCTATACCTTGTATGTCGCTGGTCGAGCGATGAATTTGAAGCTTACAAAGAAGGCTTGATGCACCTAG
species | Zea mays |
transcript | GRMZM2G155437_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGTTTGTGAGGAAGGAAAACCCCTTTCGCCAGAAGCAGCACAGATTCTG CGGCTGCTTGGGATACAGAEST: gi|78081476|gb|DV509888.1|DV509888
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCACAGATTCTGgtacagtatc ... tctcttgcagCGGCTGCTTGGGATACAGA
EST: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCACAGATTCTG CGGCTGCTTGGGATACAGATGGCGACATTCCGTCTATACCTTGTATGTCGCEST: gi|78081475|gb|DV509887.1|DV509887
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCACAGATTCTGgtacagtatc ... tctcttgcagCGGCTGCTTGGGATACAGATGGCGACATTCCGTCTATACCTTGTATGTCGC
EST: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCACAGATTCTG CGGCTGCTTGGGATACAGATGGCGACATTCCGTCTATACCTTGTATGTCGCEST: gi|60394127|gb|DN226997.1|DN226997
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCACAGATTCTGgtacagtatc ... tctcttgcagCGGCTGCTTGGGATACAGATGGCGACATTCCGTCTATACCTTGTATGTCGC
EST: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCACAGATTCTG CGGCTGCTTGGGATACAGATGGCGACATTCCGTCTATACCTTGTATGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCACAGATTCTGgtacagtatc ... tctcttgcagCGGCTGCTTGGGATACAGATGGCGACATTCCGTCTATACCTTGTATGTCGC
attttatccttttctactccattgtattgagtctcattcggtctctctcttgcagCGGCTGCTTGGGATACAGATGGCGACATTCCGTCTATACCTTGTATGTCGCTGGTCGAGCGATGAATTTGAAGCTTACAAAGAAGGCTTGATGCACCTAG
ttcggtctctctctt CT-rich tract
attgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtatcattgcgcaatggttgtcgtatgtttgatttagaagatatgccataatccactatgtaacttatgatcaatctaaagtttaggctccattgtgcccagtttacgtgaaaaccgacacattctcattttatccttttctactccattgtattgagtctcattcggtctctctcttgcagCGGCTGCTTGGGATACAGATGGCGACATTCCGTCTATACCTTGTATGTCGCTGGTCGAGCGATGAATTTGAAGCTTACAAAGAAGGCTTGATGCACCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG