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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttagctgatctttcacctcgttaaaagttgacatatgcaaggcagatttacattgaaacttgtcactcttttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG

Basic information

species Zea mays
transcript GRMZM2G155242_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
gtctgttagctgatctttca--cctcgttaaaagt-tgacat----atgcaaggcagatttacattgaaacttgtcactct--tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG
|| ||  |  ||  | |  |  | ||   |  ||| || |||    |   ||   || |||  ||| |||||||||  | |  | |  |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG

upper sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 7
-----------------------gtctgttagctga---tctttcacctcgttaaaagt-tgacatatgcaaggcagatttacattgaaacttgtcactcttttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG
                       ||   | || |     | |||||||   ||   | | |  | |   |  | ||| | |    |   |  ||      |    |||||||||||||| ||||| || || |||||||| || ||||| |||||||| |||||||| ||||||||                                   
gtgaacatcccgaccatgttgttgttattaaggtatatttgtttcacccatttttcactatttctttctcttgtcagGTCTTTGATTCTATCTGCTTTGTTGCCTTTGCAGTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCAGAGATATTCATGGGT----------------------------------

upper sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 4
--------gtctgttagctgatctttcacctcgttaaaagttgacatatgcaaggcagatttacattgaaacttgtcactctt-ttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG
         | | ||   | || |||   | |         |  || || |||       ||   |||| ||||     | || || |||||||| ||||| || || || |||||||||||||| ||||| |||||||| || ||||| |||||||| || |||||||| || ||| |||||||||| ||||
gtaattttttttatttttttatttttagtcactactccctctttcaaattcaattggttatttttttgacactttggtttattgtttttgcagTACGTGCCTTATGTAGGGGACAGCAAGAGGGCCATGGATGAGTACACTTCTGAGATATTCATGGGTGGAAAGAACACAATTGTGTTGCACAACACATGTG

upper sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
----gtctgttagctgatctttcac-ctcgttaaaagttgacatatgcaaggcagatttacattgaaacttgtcactcttttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG
     | |  |   |  ||  |||| ||| || ||| |  |    | |          | | | |  | ||       |  | ||||||||||| || ||||| || |||||||||||||| ||||| |||||| | || ||||| ||||||||||| |||||||| || ||| |||||||||| ||||
gtaatttttatttttagtcactcactctctttcaaattcaattggttctttatttgact-cttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG

upper sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA18G02210.4 (Glycine max), 3'ss of exon 7
gtctgttagctgatctttcacctcgttaaaagttgacatatgcaaggcagatttacattgaaacttgtcactcttttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG
    ||    |  | |  | | |  || |   ||  | |   |  | ||| | |    |   |  ||      |    |||||||||||||| ||||| || || |||||||| || ||||| |||||||| |||||||| |||||||| || ||||||||||| ||  |||||||||| ||||
----gtatatttgtttcacccatttttcactattt-ctttctcttgtcaggtctttgattctatctgctttgttgcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCAGAGATATTCATGGGTGGAAAGAACACCATTGTTTTGCACAACACATGTG

upper sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 7
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 7
gtctgttagctgatctttcacctcgttaaaagttgacatat--gcaaggcagatttacattgaaacttgtcactcttt--tgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG
      |   | || || |   |  ||| || |   ||      |||  || ||| ||||  ||   |   | |   |  |||||||||||||||| |  || |||||||||||||| || ||||| || ||||| |||||||| |||||||| || |||||||| || ||| |||||||||| ||||
-----gtgattaattttactattaattataattatccaatctaacaaatcacattaacat-aaattatactattggatggtgttgcagTATGTGCCATGTGTAGGAGACAGCAAGAGAGCAATGGATGAATACACATCAGAGATATTCATGGGAGGGAAGAACACGATTGTGATGCACAACACTTGTG

upper sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 7
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 3'ss of exon 7
gtctgttagctgatctttcacctcgttaaaa---gttgacatatgcaaggcagatttacattga---aacttgtcactcttttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG
      |||   | |   ||     | ||||   |||    |  ||||       |  ||||||   || ||||     || | ||| ||||||| ||||| || |  || || ||| | || |||||||||||||| |||||||| |||||||| || |||||||| || ||| ||||||| ||||| |
-gtaaatagagaaccggacagacactcaaaacctgtttctgttggcaatctgagatcccattgatccaatttgt-gtgtttgttttgtagTATGTACCGTATGTTGCGGATAGTAAGCGAGCCATGGACGAGTACACATCAGAGATATTCATGGGAGGGAAGAACACAATTGTGATGCACAATACCTGCG

upper sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 7
-------------------gtctgttagctgatctttcacctc-gttaaaagtt--gacatatgcaag---gcagatttacattgaaacttgtcactcttttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG
                    | |||| |    | || ||  || | |    |||  |||  || ||      | |  | |||||  |   |||   |  |   |||||||||||||| || || ||||| |||||||| || ||||| |||||||| || ||||| |||||||| || |||| |||||| ||||||||||||||||| |
gtatatcgcagaaccctccttttgtttgtatgtattacaattcagatgctggtttggactcattcattctcactggctaacattatacggtgttgttgat--attgcagTATGTGCCATATGTTGGAGATAGCAAGAGAGCCATGGATGAGTACACTTCTGAGATATTCATGGGTGGGAAGAGCACCATTGTGCTGCACAACACCTGCG

upper sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 7
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
----------------------------------gtctgttagctgat----ctttcacctcg--ttaaaagttg---acatatgcaagg-----cagatttacattgaaacttg--tcact--cttttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG
                                  || |   |||   |    |||| |  ||    |  ||||||    |||   ||  |     |  || | | |   |||     ||| |  |      ||||||| || || || ||||| |||||||||||||| |||||||||||||| || |||||||||||||||||    ||||| |||||  ||||||| || || |
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32838843|gb|CD978524.1|CD978524
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTA
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTA
EST: gi|31352226|gb|CD436583.1|CD436583
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|31362702|gb|CD447059.1|CD447059
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|32926333|gb|CF031145.1|CF031145
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTAC
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTAC
EST: gi|211029036|gb|FL245282.1|FL245282
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|24768757|gb|CA403886.1|CA403886
EST:     ATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: ATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|5080959|gb|AI738221.1|AI738221
EST:     CCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|32859828|gb|CD999509.1|CD999509
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCT
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|24767240|gb|CA402384.1|CA402384
EST:     ATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: ATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|5030583|gb|AI714777.1|AI714777
EST:     GCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACA-CTCA
genomic: GCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|211414409|gb|FL441882.1|FL441882
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGC-AGAGGGGCTATGGACGAGTACACCTC
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGA-GGGCTATGGACGAGTACACCTC
EST: gi|211029043|gb|FL245289.1|FL245289
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|24766339|gb|CA401493.1|CA401493
EST:     CCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTCCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|37380822|gb|CF627249.1|CF627249
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTGGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|211029039|gb|FL245285.1|FL245285
EST:     CTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|31353688|gb|CD438045.1|CD438045
EST:     CGGACTTCATCGCGGCTAACCAGGGCTCTCGCGCCAACAGTGTCATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAG
genomic: CGGACTTCATCGCGGCTAACCAGGGCTCTCGCGCCAACAGTGTCATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAG
EST: gi|32863171|gb|CF002853.1|CF002853
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCT
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|20208400|gb|BQ134489.1|BQ134489
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|24766267|gb|CA401422.1|CA401422
EST:     ATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: ATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|4730538|gb|AI649704.1|AI649704
EST:     GTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: GTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|78023741|gb|DV492128.1|DV492128
EST:     CCATCCTTTATGAGCCGGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|31352116|gb|CD436473.1|CD436473
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|211029040|gb|FL245286.1|FL245286
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|6536588|gb|AW224901.1|AW224901
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGAC
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGAC
EST: gi|78545065|gb|DV622563.1|DV622563
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA
EST: gi|32864017|gb|CF003699.1|CF003699
EST:     CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAG                         TATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCT
genomic: CCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 344

CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCGAGCAATGCCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 37

CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCGAGCAATGCCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG


Block sizes: 42 (upstream exon), 46 (downstream exon)
Score: 27

CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCGAGCAATGCCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG


Block sizes: 46 (upstream exon), 48 (downstream exon)
Score: 110

CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCGAGCAATGCCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagc ... tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttgacatatgcaaggcagatttacattgaaacttgtcactcttttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG
 agttgac  putative branch site (score: 110)
                                  cttgtcactctttt  putative PPT
                     atttacatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctgttagctgatctttcacctcgttaaaagttgacatatgcaaggcagatttacattgaaacttgtcactcttttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC