1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacattctctttagcccttggtcaaacacttctgattctgattttatcccctctaaaaagtattattcttaatatcttactcttgcagGGCTAATGCCAAGCTAGTTTATGCATGTGAGTGGAATCCACATGCTCTGGAGGCTCTTCGGCGCAATGTTAGTGACAACAGAGTGGAGGATCGATGTATT
species | Zea mays |
transcript | GRMZM2G154574_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAA GGCTAATGCCAAGCTATTTTATGCATGTGAGTGGAATCCACATGCTCTGGAEST: gi|26559427|gb|CA831662.1|CA831662
genomic: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAAgtacattctc ... actcttgcagGGCTAATGCCAAGCTAGTTTATGCATGTGAGTGGAATCCACATGCTCTGGA
EST: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAA GGCTAATGCCAAGCTATTTTATGCATGTGAGTGGAATCCACATGCTCTGGAEST: gi|26559057|gb|CA831292.1|CA831292
genomic: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAAgtacattctc ... actcttgcagGGCTAATGCCAAGCTAGTTTATGCATGTGAGTGGAATCCACATGCTCTGGA
EST: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAA GGCTAATGCCAAGCTATTTTATGCATGTGAGTGGAATCCACATGCTCTGGAEST: gi|22542262|gb|BU092700.1|BU092700
genomic: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAAgtacattctc ... actcttgcagGGCTAATGCCAAGCTAGTTTATGCATGTGAGTGGAATCCACATGCTCTGGA
EST: G-GGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAA GGCTAATGCCAAGCTATTTTATGCATGTGAGTGGAATCCACATGCTCTGGAEST: gi|32942516|gb|CF047335.1|CF047335
genomic: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAAgtacattctc ... actcttgcagGGCTAATGCCAAGCTAGTTTATGCATGTGAGTGGAATCCACATGCTCTGGA
EST: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAA GGCTAATGCCAAGCTAGTTTATGCATGTGAGTGGAATCCACATGCTCTGGAEST: gi|87155759|gb|DY400548.1|DY400548
genomic: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAAgtacattctc ... actcttgcagGGCTAATGCCAAGCTAGTTTATGCATGTGAGTGGAATCCACATGCTCTGGA
EST: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAA GGCTAATGCCAAGCTATTTTATGCATGTGAGTGGAATCCACATGCTCTGGAEST: gi|22935761|gb|BU572036.1|BU572036
genomic: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAAgtacattctc ... actcttgcagGGCTAATGCCAAGCTAGTTTATGCATGTGAGTGGAATCCACATGCTCTGGA
EST: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAA GGCTAATGCCAAGCTATTTTATGCATGTGAGTGGAATCCACATGCTCTGGA
genomic: GTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAAgtacattctc ... actcttgcagGGCTAATGCCAAGCTAGTTTATGCATGTGAGTGGAATCCACATGCTCTGGA
gattctgattttatcccctctaaaaagtattattcttaatatcttactcttgcagGGCTAATGCCAAGCTAGTTTATGCATGTGAGTGGAATCCACATGCTCTGGAGGCTCTTCGGCGCAATGTTAGTGACAACAGAGTGGAGGATCGATGTATT
atcttac putative branch site (score: 3)
tcttactctt CT-rich tract
tctaaaaagtattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattctctttagcccttggtcaaacacttctgattctgattttatcccctctaaaaagtattattcttaatatcttactcttgcagGGCTAATGCCAAGCTAGTTTATGCATGTGAGTGGAATCCACATGCTCTGGAGGCTCTTCGGCGCAATGTTAGTGACAACAGAGTGGAGGATCGATGTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT