1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atacgccttataagaagaaacagagggagtatctctggtaacgactttatgttagctacatgtttgagtgatgctaatgtttcatgacattggtttgtagTCATCAGAAGAGCTCCGCATGAATTCAAGATTTCGTGTCTAGAG
species | Zea mays |
transcript | GRMZM2G154366_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCCTGTTGTTATATCTCCAGATGGTCTCTTCCCGTCACTTTACAGAGAAG TCATCAGAAGAGCTCCGCATGAATTEST: gi|6021355|gb|AW066283.1|AW066283
genomic: CCCTGTTGTTATATCTCCAGATGGTCTCTTCCCGTCACTTTACAGAGAAGgtgagcacat ... tggtttgtagTCATCAGAAGAGCTCCGCATGAATT
EST: CCCTGTTGNTATATCTCCAGATGGTCTCTTCCCGTCACTTTACAGAGAAG TCATCAGAAGAGCTCCGCATGAATTCAAGATTTC
genomic: CCCTGTTGTTATATCTCCAGATGGTCTCTTCCCGTCACTTTACAGAGAAGgtgagcacat ... tggtttgtagTCATCAGAAGAGCTCCGCATGAATTCAAGATTTC
tttatgttagctacatgtttgagtgatgctaatgtttcatgacattggtttgtagTCATCAGAAGAGCTCCGCATGAATTCAAGATTTCGTGTCTAGAG
tgctaat putative branch site (score: 93)
taatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacgccttataagaagaaacagagggagtatctctggtaacgactttatgttagctacatgtttgagtgatgctaatgtttcatgacattggtttgtagTCATCAGAAGAGCTCCGCATGAATTCAAGATTTCGTGTCTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - -ataagaag
- - - - - - - - -aaacaga
- - - - - - - - - - - - - - - - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttca