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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttctctgtcaaatatccaactgtacctgcaatcgtctgtttgtaatgatttttcccctgttacatggctaactattatgatttttaattatattcagGGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATACGTAGGAAG

Basic information

species Zea mays
transcript GRMZM2G153434_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89106847|gb|DY577064.1|DY577064
EST:     AAATATGCAAAGAGGCCACGTTGAG                         GGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCA-CATAC
genomic: AAATATGCAAAGAGGCCACGTTGAGgcaagtgtac ... ttatattcagGGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATAC
EST: gi|89106878|gb|DY577095.1|DY577095
EST:     AAATATGCAAAGAGGCCACGTTGAG                         GGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCA-CATAC
genomic: AAATATGCAAAGAGGCCACGTTGAGgcaagtgtac ... ttatattcagGGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgatttttcccctgttacatggctaactattatgatttttaattatattcagGGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATACGTAGGAAG
                          taactattatgatttt  TA-rich tract