Sequence
atgc intronic sequence ATGC exonic sequencegtactcagattcatcagtttcatatctaaacagctatgactctcctggcttggttccgcttctgttcattattgtggttgtatttacagcattgtccattctaagGTGGAGAAAACCTCGTCTGAAGACGATCTACGATATGGAGAAAGGCAGGTACATCATAACAAGGGTCAGCCAATGAGTCGCGCACATCAGCGTTGGGAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G152457_T05 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g33850.2 (Oryza sativa), 3'ss of exon 8
gtactcagattcatcagtttcatatctaaacagctatgactctcctggcttggttccgcttctgttcatt---attgtggttgtatttacagcattgtccattctaagGTGGAGAAAACCTCGTCTGAAGACGATCTACGATATGGAGAAAGGCAGGTACATCATAACAAGGGTCAGCCAATGAGTCGCGCACATCAGCGTTGGGAGT
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gtactcagattcatcagttccatatctaaacagctattactattctgggttggttccactcctcttcatttccgctgtcgttctatttacagCATGCTCCATCCTGAGGGGGAGAAGATCTCGCCTGAAGACGGTATACGACATGGAGAAAGGCCGGTACATCATAACCAGGGTGAGACGATGAGCCTTGCG----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32940231|gb|CF045050.1|CF045050EST: GACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGA GTGGAGAAAACCTCGTCTGAAGACGATCTACGATATGGAGAAAGGCAGGTA
genomic: GACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGAgtactcagat ... ccattctaagGTGGAGAAAACCTCGTCTGAAGACGATCTACGATATGGAGAAAGGCAGGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggttccgcttctgttcattattgtggttgtatttacagcattgtccattctaagGTGGAGAAAACCTCGTCTGAAGACGATCTACGATATGGAGAAAGGCAGGTACATCATAACAAGGGTCAGCCAATGAGTCGCGCACATCAGCGTTGGGAGT
tccattct CT-rich tract
ttcattatt TA-rich tract