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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagccttttctataagttctattctttgttgaaacctggatatttatgagttttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGA

Basic information

species Zea mays
transcript GRMZM2G152457_T04
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152457_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g33850.1 (Oryza sativa), 3'ss of exon 7
gtgaagccttttct--------ataagttctattctttgttg-aaacctggatatttatga-----gttttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGA-------------
|||    |||||||        |  | |||||||     ||   ||| |    |||||  |      |||| | |||||||||||||||  || |||||    || |||||||||||||||||||||||||||||||||||||||| | ||   |||   |||||             
gtgcgatcttttctgctgttctaatatttctatttcacattttgaacttcaggatttaaaatgttcattttgtttcagGATTGATGTTGCGAATCAAATTGGCGGTGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGAAGGCGTCAAACCAGACAGAGTACTCAGATTCA

upper sequence: GRMZM2G152457_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g33850.2 (Oryza sativa), 3'ss of exon 7
gtgaagcctttt--------ctataagttctattctttgttg-aaacctggatatttatga-----gttttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGA
|||    |||||        |||  | |||||||     ||   ||| |    |||||  |      |||| | |||||||||||||||  || |||||    || |||||||||||||||||||||||||||||||||||||||| | ||   |||   |||||
gtgcgatcttttctgctgttctaatatttctatttcacattttgaacttcaggatttaaaatgttcattttgtttcagGATTGATGTTGCGAATCAAATTGGCGGTGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGAAGGCGTCAAACCAGACAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91869804|gb|EB400549.1|EB400549
EST:     ATTATTGCTCTACTGCATGATACGCTTAAAATGCCACTGGATCATAAAAG                         GATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGG
genomic: ATTATTGCTCTACTGCATGATACGCTTAAAATGCCACTGGATCATAAAAGgtgaagcctt ... tttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGG
EST: gi|5915345|gb|AW052986.1|AW052986
EST:     ATTATTGCTCTACTGCATGATACGCTTAAAATGCCACTGGGTCATAAAAG                         GATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGG
genomic: ATTATTGCTCTACTGCATGATACGCTTAAAATGCCACTGGATCATAAAAGgtgaagcctt ... tttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctataagttctattctttgttgaaacctggatatttatgagttttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGA
                                            ttttttctc  CT-rich tract
                                 atatttatgagttttt  TA-rich tract