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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagccttttctataagttctattctttgttgaaacctggatatttatgagttttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGAGTACTCAGATTCA

Basic information

species Zea mays
transcript GRMZM2G152457_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152457_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g33850.1 (Oryza sativa), 3'ss of exon 7
gtgaagccttttct--------ataagttctattctttgttg-aaacctggatatttatga-----gttttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGAGTACTCAGATTCA
|||    |||||||        |  | |||||||     ||   ||| |    |||||  |      |||| | |||||||||||||||  || |||||    || |||||||||||||||||||||||||||||||||||||||| | ||   |||   ||||||||||||||||||
gtgcgatcttttctgctgttctaatatttctatttcacattttgaacttcaggatttaaaatgttcattttgtttcagGATTGATGTTGCGAATCAAATTGGCGGTGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGAAGGCGTCAAACCAGACAGAGTACTCAGATTCA

upper sequence: GRMZM2G152457_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g33850.2 (Oryza sativa), 3'ss of exon 7
gtgaagcctttt--------ctataagttctattctttgttg-aaacctggatatttatga-----gttttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGAGTACTCAGATTCA
|||    |||||        |||  | |||||||     ||   ||| |    |||||  |      |||| | |||||||||||||||  || |||||    || |||||||||||||||||||||||||||||||||||||||| | ||   |||   |||||             
gtgcgatcttttctgctgttctaatatttctatttcacattttgaacttcaggatttaaaatgttcattttgtttcagGATTGATGTTGCGAATCAAATTGGCGGTGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGAAGGCGTCAAACCAGACAGA-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78082794|gb|DV511187.1|DV511187
EST:     ATTATTGCTCTACTGCATGATACGCTTAAAATGCCACTGGATCATAAAAG                         GATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGG
genomic: ATTATTGCTCTACTGCATGATACGCTTAAAATGCCACTGGATCATAAAAGgtgaagcctt ... tttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGG
EST: gi|211174198|gb|FL475277.1|FL475277
EST:     ATTATTGCTCTACTGCATGATACGCTTAAAATGCCACTGGATCATAAAAG                         GATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGG
genomic: ATTATTGCTCTACTGCATGATACGCTTAAAATGCCACTGGATCATAAAAGgtgaagcctt ... tttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGG
EST: gi|71759988|gb|DR957925.1|DR957925
EST:     ATTATTGCTCTACTGCATGATACGCTTAAAATGCCACTGGATCATAAAAG                         GATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGG
genomic: ATTATTGCTCTACTGCATGATACGCTTAAAATGCCACTGGATCATAAAAGgtgaagcctt ... tttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGG
EST: gi|78113077|gb|DV531471.1|DV531471
EST:     ATTATTGCTCTACTGCATGATACGCTTAAAATGCCACTGGATCATAAAAG                         GATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGG
genomic: ATTATTGCTCTACTGCATGATACGCTTAAAATGCCACTGGATCATAAAAGgtgaagcctt ... tttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctataagttctattctttgttgaaacctggatatttatgagttttttctcagGATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGAGTACTCAGATTCA
                                            ttttttctc  CT-rich tract
                                 atatttatgagttttt  TA-rich tract