1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggatacttctccacttactgaaatcctttgatgtatcgtttttcattgaggtctgtgatactataggaacctgcacattcgcaagcaaaaaacctgtaccttacaaagtttctttacttctgctatcaccaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGCACACGGTGTGCACATCTCTCGCCGTGGTAGGAGGGAGCATGCTGGCGT
species | Zea mays |
transcript | GRMZM2G151863_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAACCCTCTTAGCTGAATGAGGCGACCGGAGCCAAATAGCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|71770353|gb|DR968290.1|DR968290
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|74239214|gb|DT647128.1|DT647128
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|60356718|gb|DN223691.1|DN223691
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|74232496|gb|DT640410.1|DT640410
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: GCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|211282108|gb|FL480844.1|FL480844
genomic: GCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|161587407|gb|EY962459.1|EY962459
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: CGGAGCCAAATAGCGACAATTGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|88747529|gb|DY531670.1|DY531670
genomic: CGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: TAACCTTTTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|50336723|gb|CO531849.1|CO531849
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: TAACCTTTTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|60358343|gb|DN225316.1|DN225316
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|60348226|gb|DN215199.1|DN215199
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|40335107|gb|CK369177.1|CK369177
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|33466756|gb|CF243805.1|CF243805
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: TAACCTTTTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGEST: gi|89754829|gb|DY685473.1|DY685473
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
EST: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCG CTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGGAGCCAAATAGCGACAATCGCGgtaggatact ... accaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGG
aagcaaaaaacctgtaccttacaaagtttctttacttctgctatcaccaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGCACACGGTGTGCACATCTCTCGCCGTGGTAGGAGGGAGCATGCTGGCGT
accttac putative branch site (score: 3)
tttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggatacttctccacttactgaaatcctttgatgtatcgtttttcattgaggtctgtgatactataggaacctgcacattcgcaagcaaaaaacctgtaccttacaaagtttctttacttctgctatcaccaatgcagCTGGCAACACACAAGAACGCAATCGGAGTCGCAGTGGGAGCGTCACTGGGGCACACGGTGTGCACATCTCTCGCCGTGGTAGGAGGGAGCATGCTGGCGT
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