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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttttcttctccccttcacccattctccccgaagccgtgacatttatttggttattatgccgcggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGAATCCTGTTGCTAAAGCAGGATCTGACGTGCAGCACGCTGCCGACCGCCC

Basic information

species Zea mays
transcript GRMZM2G150209_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110508237|gb|EE018470.1|EE018470
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGGAGGGGGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAG
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGT-GGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAG
EST: gi|26558397|gb|CA830632.1|CA830632
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|149105392|gb|EE290900.2|EE290900
EST:     TGCCACACATCCTCCACCCCTGCATCAGAAACCAGAGACATTTGCTAGAG                         GTACTGTGTGGAGGGGGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|78085956|gb|DV514349.1|DV514349
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|149076762|gb|EE165408.2|EE165408
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|71763175|gb|DR961112.1|DR961112
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|6469019|gb|AW191795.1|AW191795
EST:     TGCCACACATCCTCCNCCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCCCAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|67023920|gb|CO452669.1|CO452669
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAAAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|8930109|gb|BE224947.1|BE224947
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|87156906|gb|DY401695.1|DY401695
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|110963433|gb|EE183333.1|EE183333
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|5325088|gb|AI783279.1|AI783279
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|5846898|gb|AI999981.1|AI999981
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|110209031|gb|EC890928.1|EC890928
EST:     TGCATCAGAAACCAGGAGACATTTGCTAGAG                         GTACTGTGTGGAGGGGGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCATCAGAAACCA-GAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|22133528|gb|BQ833762.1|BQ833762
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|211125410|gb|FL031448.1|FL031448
EST:     TGCCACACATCCTCCANCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|76916674|gb|DV166495.1|DV166495
EST:     TGCCACACATCCTCCACCCCTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|211094011|gb|FL456459.1|FL456459
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|91870113|gb|EB400708.1|EB400708
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATTTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|78084663|gb|DV513056.1|DV513056
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGGGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|74238912|gb|DT646826.1|DT646826
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|60291833|gb|DN190072.1|DN190072
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|78087169|gb|DV515562.1|DV515562
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|211134459|gb|FL464550.1|FL464550
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|18383494|gb|BM416694.1|BM416694
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|211233125|gb|FL455326.1|FL455326
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGA-GGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|78087974|gb|DV516367.1|DV516367
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|1366570|gb|W59832.1|W59832
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|78104490|gb|DV522908.1|DV522908
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|94475807|gb|EB704765.1|EB704765
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|78122727|gb|DV541111.1|DV541111
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|18383699|gb|BM416899.1|BM416899
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|88750015|gb|DY534156.1|DY534156
EST:     CAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: CAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|32803874|gb|CD956110.1|CD956110
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|5566698|gb|AI881714.1|AI881714
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGGGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|28982677|gb|BQ539500.2|BQ539500
EST:     TGCCACACATCCTCCACCATTGCATCAGAAACCAGAGACATCTGCTAAAG                         GTACTGTGTGAAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acccattctccccgaagccgtgacatttatttggttattatgccgcggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGAATCCTGTTGCTAAAGCAGGATCTGACGTGCAGCACGCTGCCGACCGCCC
                        atttatttggttatta  TA-rich tract