1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatggctgtgtagttctcattttctgattcttaactagtcctttgcgtttcttttttcccttcatacattttcccttcatacaaacttattcattcttgcaaatttcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCT
species | Zea mays |
transcript | GRMZM2G149751_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAG GCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCCEST: gi|211445887|gb|FL403734.1|FL403734
genomic: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCC
EST: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAG GCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCCEST: gi|32847674|gb|CD987355.1|CD987355
genomic: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCC
EST: TGCTAAGGCATTGGCTGGTCAAAAGGATGAG GCTTGCTTCGCAGCAAATGCTACTGCTCAGGCCTCGAGGAAATCCTCAGCCEST: gi|211059641|gb|FL374513.1|FL374513
genomic: TGCTAAGGCATTGGCTGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCC
EST: TTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGGGTCAAA-G-ATGAG GCTTACTTCGCANGCAA-TGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCEST: gi|211106464|gb|FL269547.1|FL269547
genomic: TT-GAGGTTGATGCTCTTGCTAAGGCATTGGCTGG--TCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCA-GCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACC
EST: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAAGATGAG GCTTACTTCGCAGCAAATGCTGCTGCTCAAGCCTCGAGGATATCCTCACCCEST: gi|60358604|gb|DN225577.1|DN225577
genomic: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCC
EST: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAG GCTTACTTCGCAGCAAATGCTGCTGCTCAGGCEST: gi|211107371|gb|FL269554.1|FL269554
genomic: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGC
EST: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAG GCTTACTTCGCAGCAAATGCTGCTGCTCANGCCTCGAGGAAATCCTCACCCEST: gi|211107368|gb|FL269551.1|FL269551
genomic: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCC
EST: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAG GCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCCEST: gi|23199684|gb|BU582249.1|BU582249
genomic: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCC
EST: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAG GCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCEST: gi|211106466|gb|FL269549.1|FL269549
genomic: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACC
EST: GTTGAGGTTGATGCTCTTGCTTAAG-CATTGGCCTG-TCAAAAAGATGAT GCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCCEST: gi|32833047|gb|CD972725.1|CD972725
genomic: GTTGAGGTTGATGCTCTTGCT-AAGGCATTGGC-TGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCC
EST: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAG GCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCCEST: gi|18384329|gb|BM417528.1|BM417528
genomic: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCC
EST: TTGTTGAGGTTGATGCTCTCGCTAAGGCATTGGCTGGTCAAA-GGATGAG GCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGEST: gi|211107370|gb|FL269553.1|FL269553
genomic: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCG
EST: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAG GCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCCEST: gi|32845718|gb|CD985399.1|CD985399
genomic: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCC
EST: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAG GCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCC
genomic: TTGTTGAGGTTGATGCTCTTGCTAAGGCATTGGCTGGTCAAAAGGATGAGgtatggctgt ... tcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCC
ttcatacattttcccttcatacaaacttattcattcttgcaaatttcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCT
aaacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggctgtgtagttctcattttctgattcttaactagtcctttgcgtttcttttttcccttcatacattttcccttcatacaaacttattcattcttgcaaatttcatgtacagGCTTACTTCGCAGCAAATGCTGCTGCTCAGGCCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT