1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcccgcatgtgcatacaatactttcagtggtcttttgactcctttatctcttttagatggaatttgttattaactgcagcaagtttttgaatacttgcagAATAATTCAAAATCATGCAGCTCTTTCTACTGGGTGATAAACGTTCTACAG
species | Zea mays |
transcript | GRMZM2G149576_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGTGTTAATGTCTGTCTGGTCATTGTTCTTGGTGCTGCAAGTTCTCAAG AATAATTCAAAATCATGCAGCTCTTTCTAEST: gi|71769874|gb|DR967811.1|DR967811
genomic: TTGTGTTAATGTCTGTCTGGTCATTGTTCTTGGTGCTGCAAGTTCTCAAGgtctaccttc ... atacttgcagAATAATTCAAAATCATGCAGCTCTTTCTA
EST: TGTGT-AATGTCTGTCTGGTCATTGTTCTTGGTGCTGCAAGTTTCTCA-G AATAATTCAAAATCATGCEST: gi|13237072|gb|BG355086.1|BG355086
genomic: TGTGTTAATGTCTGTCTGGTCATTGTTCTTGGTGCTGCAAGTT-CTCAAGgtctaccttc ... atacttgcagAATAATTCAAAATCATGC
EST: TTGTGTTAATGTCTGTCTGGTCATTGTTCTTGGTGCTGCAAGTTCTCAAG AATAATTCAAAATCATGCAGCTCTTTCTACTGGGTGATAAACGTTCTACAGEST: gi|13237258|gb|BG355272.1|BG355272
genomic: TTGTGTTAATGTCTGTCTGGTCATTGTTCTTGGTGCTGCAAGTTCTCAAGgtctaccttc ... atacttgcagAATAATTCAAAATCATGCAGCTCTTTCTACTGGGTGATAAACGTTCTACAG
EST: TTGTGTTAATGTCTGTCTGGTCATTGTTCTTGGTGCTGCAAGTTCTCAAG AATAATTCAAAATCATGCAGCTCTTTCTACTGGGTGATAAACGTTCTACAGEST: gi|71763997|gb|DR961934.1|DR961934
genomic: TTGTGTTAATGTCTGTCTGGTCATTGTTCTTGGTGCTGCAAGTTCTCAAGgtctaccttc ... atacttgcagAATAATTCAAAATCATGCAGCTCTTTCTACTGGGTGATAAACGTTCTACAG
EST: TTGTGTTAATGTCTGTCTGGTCATTGTTCTTGGTGCTGCAAGTTCTCAAG AATAATTCAAAATCA
genomic: TTGTGTTAATGTCTGTCTGGTCATTGTTCTTGGTGCTGCAAGTTCTCAAGgtctaccttc ... atacttgcagAATAATTCAAAATCA
atctcttttagatggaatttgttattaactgcagcaagtttttgaatacttgcagAATAATTCAAAATCATGCAGCTCTTTCTACTGGGTGATAAACGTTCTACAG
tattaac putative branch site (score: 1)
aatttgttattaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccgcatgtgcatacaatactttcagtggtcttttgactcctttatctcttttagatggaatttgttattaactgcagcaagtttttgaatacttgcagAATAATTCAAAATCATGCAGCTCTTTCTACTGGGTGATAAACGTTCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC