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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgctttcacgttcagcttttccaggtttttgctctgctctagatattgtcagttggaactaacagaaatatgtgtcttagGGTTACACGGACATAAAGAAAAGATCATTGTTATCTTCCTTGGAGGATTACAGTACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGG

Basic information

species Zea mays
transcript GRMZM2G149520_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353684|gb|CD438041.1|CD438041
EST:     CCAGTCTGTCTGCAGCTGACTTGCTTGCCAAAGCACTTGCAAAGGCAGTT                         GGTTACACGGACATAAAGAAAAGATCATTGTTATCTTCCTTGGAGGATTAC
genomic: CCAGTCTGTCTGCAGCTGACTTGCTTGCCAAAGCACTTGCAAAGGCAGTTgtaagttgct ... tgtgtcttagGGTTACACGGACATAAAGAAAAGATCATTGTTATCTTCCTTGGAGGATTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgctctgctctagatattgtcagttggaactaacagaaatatgtgtcttagGGTTACACGGACATAAAGAAAAGATCATTGTTATCTTCCTTGGAGGATTACAGTACACTACATCTTCAAACTGGCAGACCGATGTGGTCACCTGG
                               aactaac  putative branch site (score: 1)
              tagatatt  TA-rich tract