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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttgtcatttcttgcacatgcttaataataccgctgtttgcttcactttttccttcatttcatactccattgtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATGGTATGTAGTTCTTTTTTATCATGTTT

Basic information

species Zea mays
transcript GRMZM2G149238_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149238_T03 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA16G25450.3 (Glycine max), 3'ss of exon 8
--------gtcagttgtcatttcttgcacatgcttaataataccg-ctgtttgcttcactttttccttcatttcatactccattgtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATGGTATGTAGTTCTTTTTTATCATGTTT
         |   || | ||| |   |     |  |||  |   | ||   ||  |   | |||   |  ||||||  |||||| |||  |||||||||| ||||| ||||||||||| |||||||| ||||| |||||  | |||||  | |||   || |||||                          
gtaatatttttgcttataattccccccctccccccaatttttttggctcactggatttttatttatctgttttcat-ttccatttttt--agGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG--------------------------

upper sequence: GRMZM2G149238_T03 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA03G04500.1 (Glycine max), 3'ss of exon 8
--gtcagttgtcatttcttgcacatgcttaataataccgctgtttgcttcactttttccttcatttcatactccatt--gtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATGGTATGTAGTTCTTTTTTATCATGTTT
     | || |  ||   |   |     ||||  | || |  |||  ||   |   |   |   |   |  || |||   |||  |||||||||| ||||| ||||||||||| |||||||| |||||||||||  | |||||  | |||   || |||||                          
gtaaaaattttgcttatatttccccttgtaatt-tccctccatttttttggttcactgaatttatctgttttcaattccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG--------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataataccgctgtttgcttcactttttccttcatttcatactccattgtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATGGTATGTAGTTCTTTTTTATCATGTTT
 gcttaat  putative branch site (score: 4)
                                        ctccatt  putative PPT
                                atttcata  TA-rich tract