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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccttaaccattatgctagaggccctttcacatcatgattgtttttttcaccagtactgtatttaccattgactggaaattgccatcctaacactatgcagACAGTGAAGAATCACAGGAACCTACCAAGCGACGCAATAGATTGGGTTCAGCAGGCCTTGCACTGCATTACGCCAATATCATCAGTCAGATCGATACTCT

Basic information

species Zea mays
transcript GRMZM2G148773_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G148773_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g65330.2 (Oryza sativa), 3'ss of exon 7
ccttaaccattatgctagaggccctttcacatcatgattgtttttttcacca--gtactgtatttacca--ttgactggaaattgccatcctaacactatgcagACAGTGAAGAATCACAGGAACCTACCAAGCGACGCAATAGATTGGGTTCAGCAGGCCTTGCACTGCATTACGCCAATATCATCAGTCAGATCGATACTCT
     |  |||| | ||  |    | | | |  |||   | | |    |  |  |||| || || |  |  || |     || |    |  |  || | |  ||||| |||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
---ctataattagg-taatgaaaatataataaaatggaagatctacatattattgtaccgtgttgaataaattcatcattaactatttttttctcaatttatagACAATGAAGAATCACAAGAACCTACCAAACGACGTAATAGATTGGGTCCAGCAGGCCTTGCACTGCATTACGCCAATATCATCAGTCAGATCGATACTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17930104|gb|BM267064.1|BM267064
EST:     GGAGATCCATAATGCATTTGGGCTTTCAG                         ACAGTGAAGAATCACAGGAACCTACCAAGCGACGCAATAGATTGGGTTCAG
genomic: GGAGATCCATAATGCATTTGGGCTTTCAGgtaataacct ... cactatgcagACAGTGAAGAATCACAGGAACCTACCAAGCGACGCAATAGATTGGGTTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaccagtactgtatttaccattgactggaaattgccatcctaacactatgcagACAGTGAAGAATCACAGGAACCTACCAAGCGACGCAATAGATTGGGTTCAGCAGGCCTTGCACTGCATTACGCCAATATCATCAGTCAGATCGATACTCT
                                       tcctaac  putative branch site (score: 1)
           tgtattta  TA-rich tract