1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaagcctagtaatctgaattagtttatgattgcaccgagtcacgcgttcgggaagcaaaggcatgaagggagtttgccgtggtaatcgaatctcgtgacatgtttgaccttgcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG
species | Zea mays |
transcript | GRMZM2G147882_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32858736|gb|CD998417.1|CD998417
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGEST: gi|78117759|gb|DV536146.1|DV536146
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATG
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACTTGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32924110|gb|CF028922.1|CF028922
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAGCTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
agggagtttgccgtggtaatcgaatctcgtgacatgtttgaccttgcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG
gtttgac putative branch site (score: 54)
cgttttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagcctagtaatctgaattagtttatgattgcaccgagtcacgcgttcgggaagcaaaggcatgaagggagtttgccgtggtaatcgaatctcgtgacatgtttgaccttgcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG