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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaagctccctagagatgttctcctgcaatttctactatggaaaacaaataggaatgtaattcaatatttgattatacagGTACAAGGCTGGTAAGCAAGAGGTTTCAATATTGGAAAAACTTGCAAGTGCGGACCGTGAGGACAAACGCCACTGCGTGCGGTTTATTTCTAGTTTCATG

Basic information

species Zea mays
transcript GRMZM2G147811_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147811_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 3'ss of exon 7
gtaagttaagctccctagagatgttctcctgcaatttctactatggaaaacaaataggaa--tgtaattcaatatttgattatacagGTACAAGGCTGGTAAGCAAGAGGTTTCAATATTGGAAAAACTTGCAAGTGCGGACCGTGAGGACAAACGCCACTGCGTGCGGTTTATTTCTAGTTTCATG
|| ||||||||| ||||||  | || |      | || ||  |||||| |   | | ||   | | |||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||||
gtgagttaagcttcctagaagtatttttggtttacttgtagcatggaacatgtacatgacccttttatttgatatttgattatacagGTACAAGGCTGGTAAGCAAGAGGTTTCAATATTAGAAAAACTGGCAAGTGCGGATCGTGAAGACAGGCGCCACTGCGTGCGGTTTATTTCTAGTTTCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67021773|gb|CO450522.1|CO450522
EST:     GATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAAT                         GTACAAGGCTGGTAAGCAAGAGGTTTCAATATTGGAAAAACTTGCAAGTGC
genomic: GATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAATgtaagttaag ... gattatacagGTACAAGGCTGGTAAGCAAGAGGTTTCAATATTGGAAAAACTTGCAAGTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatttctactatggaaaacaaataggaatgtaattcaatatttgattatacagGTACAAGGCTGGTAAGCAAGAGGTTTCAATATTGGAAAAACTTGCAAGTGCGGACCGTGAGGACAAACGCCACTGCGTGCGGTTTATTTCTAGTTTCATG
                                         atttgat  putative branch site (score: 5)
                            aatgtaattcaatatt  TA-rich tract