Sequence
atgc intronic sequence ATGC exonic sequencegtaagttaagctccctagagatgttctcctgcaatttctactatggaaaacaaataggaatgtaattcaatatttgattatacagGTACAAGGCTGGTAAGCAAGAGGTTTCAATATTGGAAAAACTTGCAAGTGCGGACCGTGAGGACAAACGCCACTGCGTGCGGTTTATTTCTAGTTTCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G147811_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 3'ss of exon 7
gtaagttaagctccctagagatgttctcctgcaatttctactatggaaaacaaataggaa--tgtaattcaatatttgattatacagGTACAAGGCTGGTAAGCAAGAGGTTTCAATATTGGAAAAACTTGCAAGTGCGGACCGTGAGGACAAACGCCACTGCGTGCGGTTTATTTCTAGTTTCATG
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gtgagttaagcttcctagaagtatttttggtttacttgtagcatggaacatgtacatgacccttttatttgatatttgattatacagGTACAAGGCTGGTAAGCAAGAGGTTTCAATATTAGAAAAACTGGCAAGTGCGGATCGTGAAGACAGGCGCCACTGCGTGCGGTTTATTTCTAGTTTCATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67021773|gb|CO450522.1|CO450522EST: GATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAAT GTACAAGGCTGGTAAGCAAGAGGTTTCAATATTGGAAAAACTTGCAAGTGC
genomic: GATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAATgtaagttaag ... gattatacagGTACAAGGCTGGTAAGCAAGAGGTTTCAATATTGGAAAAACTTGCAAGTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaatttctactatggaaaacaaataggaatgtaattcaatatttgattatacagGTACAAGGCTGGTAAGCAAGAGGTTTCAATATTGGAAAAACTTGCAAGTGCGGACCGTGAGGACAAACGCCACTGCGTGCGGTTTATTTCTAGTTTCATG
atttgat putative branch site (score: 5)
aatgtaattcaatatt TA-rich tract