1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tggggtgaatactagagtatccaaacaaagccttaatgtgtggctctgtagcagaaacaacattgaaatggcactgaaagtaccctatcctaatttgcagGAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAG
species | Zea mays |
transcript | GRMZM2G147500_T05 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAG GAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCTEST: gi|76923168|gb|DV169366.1|DV169366
genomic: ATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatgtattt ... taatttgcagGAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCT
EST: AGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAG GAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCTEST: gi|60347145|gb|DN214118.1|DN214118
genomic: AGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatgtattt ... taatttgcagGAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCT
EST: AGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAG GAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCTEST: gi|87156724|gb|DY401513.1|DY401513
genomic: AGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatgtattt ... taatttgcagGAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCT
EST: AGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAG GAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCTEST: gi|149081286|gb|EE170399.2|EE170399
genomic: AGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatgtattt ... taatttgcagGAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCT
EST: AGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAG GAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCT
genomic: AGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatgtattt ... taatttgcagGAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCT
ctgtagcagaaacaacattgaaatggcactgaaagtaccctatcctaatttgcagGAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAG
tcctaat putative branch site (score: 2)
ccctatcct CT-rich tract
attgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggggtgaatactagagtatccaaacaaagccttaatgtgtggctctgtagcagaaacaacattgaaatggcactgaaagtaccctatcctaatttgcagGAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT