Sequence
atgc intronic sequence ATGC exonic sequencegtatgaactatgaaggatgcagccagtatagaacatacacttttgatgtggttaccttcaggaacattttactggctctatttcatggaatgtttgctatgcttagcatcttttacatgctttttcagAAAGGTGGTGGCACCATTGGTCTTGAGCCACGCCTTAGCCACGTGTCAGCTGTGGAGCCTACTCTCGCCCCAGTTGCAGTTGAGCGTACAATGACGACAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G146118_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os07g29450.1 (Oryza sativa), 3'ss of exon 7
----------------------------------gtatgaactatgaaggatgcagccagtatag-aacatacacttttgatgtggttacctt---caggaacattttactggct-ctatttcatggaatgtttgctatgcttagcatcttttacatgctttttcagAAAGGTGGTGGCACCATTGGTCTTGAGCCACGCCTTAGCCACGTGTCAGCTGTGGAGCCTACTCTCGCCCCAGTTGCAGTTGAGCGTACAATGACGACAA
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gtattaagactgtataagataacatataaggctactgtgttctccttttgctttgagcaaaatttcagtgctttcttttgttttaatctgctgatgtaaaaaccttttattgaccactgctccatagattgtttgct-----tagtttgtattacatgctttg-cagAAAGGTGGTGGTACTATTGATCTTGAGCCTCGCCTAAGCCATACATCAGCTGTGGAGCCTACACTTGCTCCGGTTGCGGTTGAGCGCACAATGACAACAA
upper sequence: GRMZM2G146118_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv07s0130g00270.t01 (Vitis vinifera), 3'ss of exon 6
gtatgaactatgaaggatgcagccagtatagaacatacacttttgatgtggttaccttcaggaacattttactggctctatttcatggaatgtttgctatgcttagcatcttttacatgctttttcagAAAGGTGGTGGCACCATTGGTCTTGAGCCACGCCTTAGCCACGTGTCAGCTGTGGAGCCTACTCTCGCCCCAGTTGCAGTTGAGCGTACAATGACGACAA
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----------------ccttgaataat-catgatataggttcct-atctgttttctgttag--tcgttattaatgcttcattc-------tttttgct-tcctttttttcttttttctttttctctagAAAGGAGGCGGGACCATTGATCTTGAACCTTGTCTAACACATACATCAACTGTGGAGCCTACTCTTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60397960|gb|DN230776.1|DN230776EST: CTGCATTTTCAAG AAAGGTGGTGGCACCATTNGGTCTTGAGCCACGCCTTAGCCACGTGTCAGC
genomic: CTGCATTTTCAAGgtatgaacta ... gctttttcagAAAGGTGGTGGCACCATT-GGTCTTGAGCCACGCCTTAGCCACGTGTCAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggctctatttcatggaatgtttgctatgcttagcatcttttacatgctttttcagAAAGGTGGTGGCACCATTGGTCTTGAGCCACGCCTTAGCCACGTGTCAGCTGTGGAGCCTACTCTCGCCCCAGTTGCAGTTGAGCGTACAATGACGACAA
tgctttttc CT-rich tract
tatttcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgaactatgaaggatgcagccagtatagaacatacacttttgatgtggttaccttcaggaacattttactggctctatttcatggaatgtttgctatgcttagcatcttttacatgctttttcagAAAGGTGGTGGCACCATTGGTCTTGAGCCACGCCTTAGCCACGTGTCAGCTGTGGAGCCTACTCTCGCCCCAGTTGCAGTTGAGCGTACAATGACGACAA
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