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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accgttgtcatttacgttacattttgtgaaccaaacaacacctaatatgttcctagctgtattctttcatctgagacacgaagtttattatttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAATGGATTTTCAAGGTACAGTCCTCTCCATCAGGCTAGCTTGTGCTTGGAC

Basic information

species Zea mays
transcript GRMZM2G144618_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211239982|gb|FL466682.1|FL466682
EST:     CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAG                         AACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
genomic: CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAGgtatactgtt ... tttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
EST: gi|78023716|gb|DV492103.1|DV492103
EST:     CAACACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAG                         AACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
genomic: CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAGgtatactgtt ... tttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
EST: gi|71443862|gb|DR824912.1|DR824912
EST:     CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAG                         AACGATGAATTCATAGATTTAGTTTACGGCGAGATCATGAACAGACAGTAA
genomic: CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAGgtatactgtt ... tttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
EST: gi|50322551|gb|CO517677.1|CO517677
EST:     CAGCACTGTTTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAG                         AACGATGAATTCATAGATTTAGTTTACGGCGAGATCATGAACAGACAGTAA
genomic: CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAGgtatactgtt ... tttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
EST: gi|211242203|gb|FL466683.1|FL466683
EST:     CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAG                         AACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
genomic: CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAGgtatactgtt ... tttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
EST: gi|5268916|gb|AI770880.1|AI770880
EST:     CAACACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAG                         AACGATGAATTCATAGATTTAGTCTACGGNGAGATCATGAACAGACAGTAA
genomic: CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAGgtatactgtt ... tttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
EST: gi|71760852|gb|DR958789.1|DR958789
EST:     CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAG                         AACGATGAATTCATAGATTTAGTTTACGGCGAGATCATGAACAGACAGTAA
genomic: CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAGgtatactgtt ... tttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
EST: gi|37401707|gb|CF638221.1|CF638221
EST:     CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAG                         AACGATGAATTCATATATTTAGTCTACCGCGAGATCATGAACAGACAGTAA
genomic: CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAGgtatactgtt ... tttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
EST: gi|76286409|gb|DV025977.1|DV025977
EST:     CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAG                         AACGATGAATTCATAGATTTAGTTTACGGCGAGATCATGAACAGACAGTAA
genomic: CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAGgtatactgtt ... tttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
EST: gi|71762856|gb|DR960793.1|DR960793
EST:     CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAG                         AACGATGAATTCATAGATTTAGTTTACGGCGAGATCATGAACAGACAGTAA
genomic: CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAGgtatactgtt ... tttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA
EST: gi|94476180|gb|EB705138.1|EB705138
EST:     CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAG                         AACGATGAATTCATAGATTTAGTTTACGGCGAGATCATGAACAGACAGTAA
genomic: CAGCACTGTCTAGAGACAAAGTCCGAGATGCATTACTGAGACTTGTGGAGgtatactgtt ... tttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttcctagctgtattctttcatctgagacacgaagtttattatttgtgccagAACGATGAATTCATAGATTTAGTCTACGGCGAGATCATGAACAGACAGTAATGGATTTTCAAGGTACAGTCCTCTCCATCAGGCTAGCTTGTGCTTGGAC
                                   aagtttattatttgt  TA-rich tract