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gtaggttatattttattttgtaaacatccatgcatctaggatgctgattctttcagatttatttggtgctgactgccatgtgttatccccactccttcctgttccctgtctagGTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTGGTTCACATACTCAATTGTTCTTCTGTTTCTGTGTACCGCTGGATTTTGG
species | Zea mays |
transcript | GRMZM2G144254_T06 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTGTATCTGGTGCTATTGGGTCTTGCTCAGTCTTGTTTGCAAAGTCATT GTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTGEST: gi|6227147|gb|AW155676.1|AW155676
genomic: GTTGTATCTGGTGCTATTGGGTCTTGCTCAGTCTTGTTTGCAAAGTCATTgtaggttata ... ccctgtctagGTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTG
EST: GTTGTATCTGGTGCTATTGGGTCTTGCTCAGTCTTGTTTGCAAAGTCATT GTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTGEST: gi|211277446|gb|FL309933.1|FL309933
genomic: GTTGTATCTGGTGCTATTGGGTCTTGCTCAGTCTTGTTTGCAAAGTCATTgtaggttata ... ccctgtctagGTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTG
EST: GTTGTATCTGGTGCTATTGGGTCTTGCTCAGTCTTGTTTGCMAAGTCATT GTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTGEST: gi|78022546|gb|DV490933.1|DV490933
genomic: GTTGTATCTGGTGCTATTGGGTCTTGCTCAGTCTTGTTTGCAAAGTCATTgtaggttata ... ccctgtctagGTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTG
EST: GTTGTATCTGGTGCTATTGGGTCTTGCTCAGTCTTGTTTGCAAAGTCATT GTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTG
genomic: GTTGTATCTGGTGCTATTGGGTCTTGCTCAGTCTTGTTTGCAAAGTCATTgtaggttata ... ccctgtctagGTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTG
ttatttggtgctgactgccatgtgttatccccactccttcctgttccctgtctagGTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTGGTTCACATACTCAATTGTTCTTCTGTTTCTGTGTACCGCTGGATTTTGG
tgctgac putative branch site (score: 55)
ttatccccactccttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttatattttattttgtaaacatccatgcatctaggatgctgattctttcagatttatttggtgctgactgccatgtgttatccccactccttcctgttccctgtctagGTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTGGTTCACATACTCAATTGTTCTTCTGTTTCTGTGTACCGCTGGATTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA