1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgatcatcatttttttagctttagtaatgcgccaagctatgataattattgcttgagaaccatccaaaggccaaaaccagcagtagataatatcctttttctaagcagtcagtttaactgaaaactatttctatccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGAACAGATGGGCACAATTTGCAAAGAATTGGGGTTTCCTCCCGCTTGTTG
species | Zea mays |
transcript | GRMZM2G143651_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|32926653|gb|CF031465.1|CF031465
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|71533831|gb|DR784590.1|DR784590
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|211264901|gb|FK979901.1|FK979901
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|67037324|gb|CO464172.1|CO464172
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAANAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTANCA-TCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTEST: gi|31348826|gb|CD433183.1|CD433183
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTA-CAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCT
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|149074514|gb|EE162909.2|EE162909
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACEST: gi|148939122|gb|EC883548.2|EC883548
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCAC
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACEST: gi|31998510|gb|CD662109.1|CD662109
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCAC
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|211110877|gb|FL478099.1|FL478099
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|149086938|gb|EE176480.2|EE176480
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGANGTCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|78087119|gb|DV515512.1|DV515512
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTNEST: gi|67015444|gb|CO444193.1|CO444193
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCT-
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|148977668|gb|EE026094.2|EE026094
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|148963040|gb|EE013991.2|EE013991
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|31350209|gb|CD434566.1|CD434566
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|148931470|gb|EC874468.2|EC874468
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: GAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTTCAA-GAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|211264900|gb|FK979900.1|FK979900
genomic: GAGGACAAAAGCTGCAGGAGAGCAATCAGTCTT-CAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|149096347|gb|EE182072.2|EE182072
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACEST: gi|149069994|gb|EE158394.2|EE158394
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCAC
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|31354660|gb|CD439017.1|CD439017
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|32926481|gb|CF031293.1|CF031293
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|211523599|gb|FL477918.1|FL477918
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|31348834|gb|CD433191.1|CD433191
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|149069952|gb|EE158352.2|EE158352
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTAEST: gi|32925514|gb|CF030326.1|CF030326
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTA
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|9794698|gb|BE553006.1|BE553006
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|32926805|gb|CF031617.1|CF031617
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|60352887|gb|DN219860.1|DN219860
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|211523598|gb|FL477917.1|FL477917
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|32924876|gb|CF029688.1|CF029688
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|149106264|gb|EE291962.2|EE291962
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATEST: gi|71773401|gb|DR971305.1|DR971305
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCAT
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACTATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATEST: gi|32925685|gb|CF030497.1|CF030497
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAAT
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|71445608|gb|DR826658.1|DR826658
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGTCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|211110876|gb|FL478098.1|FL478098
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGEST: gi|32925444|gb|CF030256.1|CF030256
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTGEST: gi|32925655|gb|CF030467.1|CF030467
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
atatcctttttctaagcagtcagtttaactgaaaactatttctatccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGAACAGATGGGCACAATTTGCAAAGAATTGGGGTTTCCTCCCGCTTGTTG
gtttaac putative branch site (score: 300)
tttctatcc putative PPT
aaaactatttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcatcatttttttagctttagtaatgcgccaagctatgataattattgcttgagaaccatccaaaggccaaaaccagcagtagataatatcctttttctaagcagtcagtttaactgaaaactatttctatccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGAACAGATGGGCACAATTTGCAAAGAATTGGGGTTTCCTCCCGCTTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA