1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gcgaaccacgtccttgtgataaagagtttcttgcaatactgcactaatttagtatagaatggtgcaatacatgttttcaccatattcagaaatattgtagGAAGAGGCGCCTAGCGAGGATAACCCGGAAGAAGATGAAGAAGCTGAGATTGGCATGTGGGAGGCAGTAACATGGCTTGCGGTGTTAACATTCTGGGTGT
species | Zea mays |
transcript | GRMZM2G143356_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTA-TTCCAATTAAGTGGACGGAGCAACATTTACAGTCCAATAGGCAGT GAAGAAGCGCCTAGCGAGGATAACCCGGAAGAAGATGAAGAAGCTGAGATTEST: gi|211410157|gb|FL246131.1|FL246131
genomic: TCTATTTCCAATTAAGTGGACGGAGCAACATTTACAGTCCAATAGGCAGTgtaagtttga ... aatattgtagGAAGAGGCGCCTAGCGAGGATAACCCGGAAGAAGATGAAGAAGCTGAGATT
EST: TCTATTTCCAATTAAGTGGACGGAGCAACATTTACAGTCCAATAGGCA-- GAAGAGGCGCCTAGCGAGGATAACCCGGAAGAAGATGAAGAAGCTGAGATTEST: gi|91870161|gb|EB400733.1|EB400733
genomic: TCTATTTCCAATTAAGTGGACGGAGCAACATTTACAGTCCAATAGGCAGTgtaagtttga ... aatattgtagGAAGAGGCGCCTAGCGAGGATAACCCGGAAGAAGATGAAGAAGCTGAGATT
EST: TCTATTTCCAATTAAGTGGACGGAGCAACATTTACAGTCCAATAGGCAGT GAAGAGGCGCCTAGCGAGGATAACCCGGAAGAAGATGAAGAAGCTGAGATT
genomic: TCTATTTCCAATTAAGTGGACGGAGCAACATTTACAGTCCAATAGGCAGTgtaagtttga ... aatattgtagGAAGAGGCGCCTAGCGAGGATAACCCGGAAGAAGATGAAGAAGCTGAGATT
aatttagtatagaatggtgcaatacatgttttcaccatattcagaaatattgtagGAAGAGGCGCCTAGCGAGGATAACCCGGAAGAAGATGAAGAAGCTGAGATTGGCATGTGGGAGGCAGTAACATGGCTTGCGGTGTTAACATTCTGGGTGT
cactaat putative branch site (score: 184)
atattcagaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgaaccacgtccttgtgataaagagtttcttgcaatactgcactaatttagtatagaatggtgcaatacatgttttcaccatattcagaaatattgtagGAAGAGGCGCCTAGCGAGGATAACCCGGAAGAAGATGAAGAAGCTGAGATTGGCATGTGGGAGGCAGTAACATGGCTTGCGGTGTTAACATTCTGGGTGT
- gaaccac
- - - - -gtccttg
- - - - - - - - -gataaaga
- - - - - - - - - - - - - -ttcttgc
- - - - - - - - - - - - - - - - - - -actgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacatg