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...agctattcatgtaataggaaagaattgtctttctttatctttagtcatctgaaaaattcccccttgggacaagtactgaatcatttgttattaattgcagAAGGTGGCAGAGGAAGGGGCAGAGGGCGTGGACGCGGTCGTGGGCGGGGAAGGCAAGGCCATGGACCTCCTCCGCAGCAGTAGATTGGTTGGCACATCAC
species | Zea mays |
transcript | GRMZM2G142111_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGTAGATATGATGATGATGGATATAACGCACCACCTATGCAACGATATG AAGGTGGCAGAGGAAGGGGCAGAGGGCGTGGACGCGGTCGTGGGCGGGGAAEST: gi|116814849|gb|EC857465.1|EC857465
genomic: TGGTAGATATGATGATGATGGATATAACGCACCACCTATGCAACGATATGgttagttctg ... ttaattgcagAAGGTGGCAGAGGAAGGGGCAGAGGGCGTGGACGCGGTCGTGGGCGGGGAA
EST: TGGTAGATATGATGATGATGGATATAACGCACCACCTATGCAACGATATG AAGGTGGCAGAGGAAGGGGCAGAGGGCGTGGACGCGGTCGTGGGCGGGGAAEST: gi|32810380|gb|CD962614.1|CD962614
genomic: TGGTAGATATGATGATGATGGATATAACGCACCACCTATGCAACGATATGgttagttctg ... ttaattgcagAAGGTGGCAGAGGAAGGGGCAGAGGGCGTGGACGCGGTCGTGGGCGGGGAA
EST: TGGTAGATATGATGATGATGGATATAACGCACCACCTATGCAACGATATG AAGGTGGCAGGGGAAGGGGCAGAGGGCGTGGACGCGGTCGTGGGCGGGGAAEST: gi|91874465|gb|EB404422.1|EB404422
genomic: TGGTAGATATGATGATGATGGATATAACGCACCACCTATGCAACGATATGgttagttctg ... ttaattgcagAAGGTGGCAGAGGAAGGGGCAGAGGGCGTGGACGCGGTCGTGGGCGGGGAA
EST: TGGTAGATATGATGATGATGGATATAACGCACCACCTATGCAACGATATG AAGGTGGCAGAGGAAGGGGCAGAGGGCGTGGACGCGGTCGTGGGCGGGGAA
genomic: TGGTAGATATGATGATGATGGATATAACGCACCACCTATGCAACGATATGgttagttctg ... ttaattgcagAAGGTGGCAGAGGAAGGGGCAGAGGGCGTGGACGCGGTCGTGGGCGGGGAA
catctgaaaaattcccccttgggacaagtactgaatcatttgttattaattgcagAAGGTGGCAGAGGAAGGGGCAGAGGGCGTGGACGCGGTCGTGGGCGGGGAAGGCAAGGCCATGGACCTCCTCCGCAGCAGTAGATTGGTTGGCACATCAC
tattaat putative branch site (score: 183)
aatcatttgttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctattcatgtaataggaaagaattgtctttctttatctttagtcatctgaaaaattcccccttgggacaagtactgaatcatttgttattaattgcagAAGGTGGCAGAGGAAGGGGCAGAGGGCGTGGACGCGGTCGTGGGCGGGGAAGGCAAGGCCATGGACCTCCTCCGCAGCAGTAGATTGGTTGGCACATCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - attcatg
- - - - - - - - ggaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - ctgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaatc