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gtcttgagaattttctatgaactactattagctgtgtgcaacaaagagggctagtcctctggtctcccataacaagcatattcatttactccttgttctgccaaacagGCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCTGGCCGCGGTGTTTGTGAACTCCTTGGGGTTGACCCAGCTGATGTAGATA
species | Zea mays |
transcript | GRMZM2G142030_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAG GCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCTEST: gi|22818806|gb|BU498896.1|BU498896
genomic: GGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAGgtcttgagaa ... tgccaaacagGCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCT
EST: GGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAG GCTTACACATATCTGGATGAGGCC-ATAGCEST: gi|33100006|gb|CF059966.1|CF059966
genomic: GGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAGgtcttgagaa ... tgccaaacagGCTTACACATATCTGGATGAGGCCCATAGC
EST: GGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAG GCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCTEST: gi|87157040|gb|DY401829.1|DY401829
genomic: GGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAGgtcttgagaa ... tgccaaacagGCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCT
EST: GGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAG GCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCTEST: gi|33102015|gb|CF061975.1|CF061975
genomic: GGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAGgtcttgagaa ... tgccaaacagGCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCT
EST: GGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAG GCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCTEST: gi|101390589|gb|EB817229.1|EB817229
genomic: GGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAGgtcttgagaa ... tgccaaacagGCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCT
EST: GGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAG GCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCT
genomic: GGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAGgtcttgagaa ... tgccaaacagGCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCT
gtcctctggtctcccataacaagcatattcatttactccttgttctgccaaacagGCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCTGGCCGCGGTGTTTGTGAACTCCTTGGGGTTGACCCAGCTGATGTAGATA
ccataac putative branch site (score: 48)
tttactccttgttct putative PPT
atattcattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttgagaattttctatgaactactattagctgtgtgcaacaaagagggctagtcctctggtctcccataacaagcatattcatttactccttgttctgccaaacagGCTTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGACAGTCTGGCCGCGGTGTTTGTGAACTCCTTGGGGTTGACCCAGCTGATGTAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT