1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatttccgcatattctatgtctgtttcctccaactatgctgccaggccttttaagattgggatcgttcttttttacatctatgcttactttaacttacagGAACATGCTTTCTTATGTATTTCCTTTCACCTTGATGACGATGGCCCTTTCCATGCTTGCTGTCAAAGGACTGAAAGAACAAGGCCGGTTAGGTAGATCT
species | Zea mays |
transcript | GRMZM2G141185_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCACGTTCAACATTTTGTTTTCTACTATTGGTTCATACTGTTATTTTCAG GAACATGCTTTCTTATGTATTTCCTTTCACCTTGATGACGATGGCCCTTTCEST: gi|211341088|gb|FL157205.1|FL157205
genomic: CCACGTTCAACATTTTGTTTTCTACTATTGGTTCATACTGTTATTTTCAGgtaagctact ... taacttacagGAACATGCTTTCTTATGTATTTCCTTTCACCTTGATGACGATGGCCCTTTC
EST: CCACGTTCAACATTTTGTTTTCTACTATTGGTTCATACTGTTATTTTCAG GAACATGCTTTCTTATGTATTTCCTTTCACCTTGATGACGATGGCCCTTTC
genomic: CCACGTTCAACATTTTGTTTTCTACTATTGGTTCATACTGTTATTTTCAGgtaagctact ... taacttacagGAACATGCTTTCTTATGTATTTCCTTTCACCTTGATGACGATGGCCCTTTC
gccttttaagattgggatcgttcttttttacatctatgcttactttaacttacagGAACATGCTTTCTTATGTATTTCCTTTCACCTTGATGACGATGGCCCTTTCCATGCTTGCTGTCAAAGGACTGAAAGAACAAGGCCGGTTAGGTAGATCT
cttacttt CT-rich tract
ttttttacatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttccgcatattctatgtctgtttcctccaactatgctgccaggccttttaagattgggatcgttcttttttacatctatgcttactttaacttacagGAACATGCTTTCTTATGTATTTCCTTTCACCTTGATGACGATGGCCCTTTCCATGCTTGCTGTCAAAGGACTGAAAGAACAAGGCCGGTTAGGTAGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - -tctgttt
- - - - - - - - - - - - - - - - - -atgctgc
- - - - - - - - - - - - - - - - - - - - - caggcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac