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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaaatctctgccacactcatatatctatatcattaatcaattttattagccatttatttctaccaactgccatgttacaattgaccctgtatttatagtttctttgctcaaagtatgtgtaacttatagatatcttgttgcattttattttctaatttgtgtctttgtgcagTAAATGGGTTATGATGAACAAACTCACTAGGAAGCTTGCAAGAATTCCAGATGAAGTGCATACTGATATAGAGCCATACTTTGTTGGGCGTTCTGCTATT

Basic information

species Zea mays
transcript GRMZM2G140298_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G140298_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g39520.2 (Oryza sativa), 3'ss of exon 4
gttcaaatctctgccacactcatatatctatatcatta-atcaattttattagccatt--tattt---ctaccaactgccatgttacaattgaccctgtat------------ttatagtttctttgctcaaagtatgtgtaacttatagatatcttgttgcattttatt--ttctaatttgtgtctt--tgtgcagTAAATGGGTTATGATGAACAAACTCACTAGGAAGCTTGCAAGAATTCCAGATGAAGTGCATACTGATATAGAGCCATACTTTGTTGGGCGTTCTGCTATT
|||  |||   || ||| |||||| ||    || || |    || | |||||||   |  ||||     | | | |   | | |||| | ||      |||            || |  ||  | ||  || | |||  |   | |      | | ||  ||    ||||  | ||||||  |  ||   ||||||||||||||||||||||| |||| || || |||| ||| ||||||||||| |||||||| | |||||| ||||||||||||||| ||| || | || |||||
gtttgaattattgtcactctcataaatactgatgatcatgaaaactgtattagcatctgctattcaacttcctacccatcttattaccactgtttgcatatgaagtctagaagttctgtttcttctgaacatattataagctgccttacagcaacatgaagctacctatttgtcctaattgtttgctcaatgtgcagTAAATGGGTTATGATGCACAAGCTTACAAGGAGGCTAGCAAGAATTCCTGATGAAGTACGTACTGAAATAGAGCCATACTTTTTTGAGCATGCTTCTATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaacttatagatatcttgttgcattttattttctaatttgtgtctttgtgcagTAAATGGGTTATGATGAACAAACTCACTAGGAAGCTTGCAAGAATTCCAGATGAAGTGCATACTGATATAGAGCCATACTTTGTTGGGCGTTCTGCTATT
                                ttctaat  putative branch site (score: 2)
                                          tgtcttt  putative PPT
                    ttgcattttattttct  TA-rich tract