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...tcaccagtccacattattaactcctaaatatgtttctctttacttgatatatataatttgataatgttttattttgttggttttgaactatatttcatagGAACTAAGAGAGCGAATCAAGCCATACTTTTTGCGGCGCCTGAAAAGTGAAGTTGTCTTTGATACTGGTGCATCAGAAGAAAAAACATTAGCCAAGAAGA
species | Zea mays |
transcript | GRMZM2G138125_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAAAAATGCTACCGCTCGAGAGAAGCACGTAGGCTCAAATGTAGCAAAG GAACTAAGAGAGCGAATCAAGCCATACTTTTTGCGGCGCCTGAAAAGTGAAEST: gi|67035224|gb|CO463757.1|CO463757
genomic: ACAAAAATGCTACCGCTCGAGAGAAGCACGTAGGCTCAAATGTAGCAAAGgtaataactt ... tatttcatagGAACTAAGAGAGCGAATCAAGCCATACTTTTTGCGGCGCCTGAAAAGTGAA
EST: ACAAAAATGCTACCGCTCGAGAGAAGCACGTAGGCTCAAATGTAGCAAAG GAACTAAGAGAGCGAATCAAGCCATACTTTTTGCGGCGCCTGAAAAGTGAAEST: gi|211102981|gb|FL307628.1|FL307628
genomic: ACAAAAATGCTACCGCTCGAGAGAAGCACGTAGGCTCAAATGTAGCAAAGgtaataactt ... tatttcatagGAACTAAGAGAGCGAATCAAGCCATACTTTTTGCGGCGCCTGAAAAGTGAA
EST: ACAAAAATGCTACCGCTCGAGAGAAGCACGTAGGCTCAAATGTAGCAAAG GAACTAAGAGAGCGAATCAAGCCATACTTTTTGCGGCGCCTGAAAAGTGAAEST: gi|32931646|gb|CF036458.1|CF036458
genomic: ACAAAAATGCTACCGCTCGAGAGAAGCACGTAGGCTCAAATGTAGCAAAGgtaataactt ... tatttcatagGAACTAAGAGAGCGAATCAAGCCATACTTTTTGCGGCGCCTGAAAAGTGAA
EST: ACAAAAATGCTACCGCTCGAGAGAAGCACGTAGACTCAAATGTAGCAAAG GAACTAAGAGAGCGAATCAAGCCATACTTTTTGCGGCGCCTGAAAAGTGAA
genomic: ACAAAAATGCTACCGCTCGAGAGAAGCACGTAGGCTCAAATGTAGCAAAGgtaataactt ... tatttcatagGAACTAAGAGAGCGAATCAAGCCATACTTTTTGCGGCGCCTGAAAAGTGAA
gatatatataatttgataatgttttattttgttggttttgaactatatttcatagGAACTAAGAGAGCGAATCAAGCCATACTTTTTGCGGCGCCTGAAAAGTGAAGTTGTCTTTGATACTGGTGCATCAGAAGAAAAAACATTAGCCAAGAAGA
atttgat putative branch site (score: 5)
atataatttgataatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaccagtccacattattaactcctaaatatgtttctctttacttgatatatataatttgataatgttttattttgttggttttgaactatatttcatagGAACTAAGAGAGCGAATCAAGCCATACTTTTTGCGGCGCCTGAAAAGTGAAGTTGTCTTTGATACTGGTGCATCAGAAGAAAAAACATTAGCCAAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG