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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagaaaaacctgtcaggtgtttttaactctcttaagacggtgtaaatgttagtgcttgcctcctgttagattgaatggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT

Basic information

species Zea mays
transcript GRMZM2G137930_T02
intron # 7
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 3'ss of exon 7
gagaaaaacctg-tcaggtgtttttaactctcttaagacggtgtaaatgttag--tgcttgcctcctgttagattgaatggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT
   | | |||   | |  |  | ||     ||  | ||   ||  ||| | |     |||| | ||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || || || || |||||||| |||||| ||||||| ||
---acacaccaacttaaatactcttgggagtcccaggatcatgctaatttcaaaacacttgtcacctcttagaccgaatggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g74350.1 (Oryza sativa), 3'ss of exon 8
gagaaaaacctgtcaggtgtttttaactctcttaagacggtgtaaatgt-------tagtgcttgcctcctgttagattgaatggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT
          ||     ||  | |    | ||||   |  |||| ||||        ||||||    || | ||  ||||| |  |||||||||  | |  |   |||||||||||||||||| |||||||| ||||| || |||||  | || || |   | ||||||||  ||||||  || || ||
------tcgttgattactgcatcttggccacttagtgca-tgtacatgtacttagacagtgctactatcttcttgaattgagtattttctttaatggggtaaaatagACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCACTTCTGCTTATGAGACCATACGCCATTCCAT

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA13G19500.2 (Glycine max), 3'ss of exon 7
gagaaaaacctgtcaggtgtttttaactctcttaagacggtgtaaatgttagtgcttgcctcctgttagattgaa---------tggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT
           || ||     | ||  |  |     |      || | | | |   |||  | ||| | ||  ||         || |||  ||||   ||  ||| |||||||||||||||||||||||| ||||| ||||| |||||||| || ||    || || |||||||| ||  |||| || ||
-----------gttag---catctacataacagcgaaatacacaagtatcatttggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaagGAATT-AGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA13G19500.1 (Glycine max), 3'ss of exon 7
-------------------------------gagaaaaacctgtcaggtgtttttaactctcttaagacggtgta----aatgttagtgcttgcctcctgttagattgaa---------tggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT
                               |   |  || |   |  ||||   | ||   | |   ||   ||    | | | | |   |||  | ||| | ||  ||         || |||  ||||   ||  ||| |||||||||||||||||||||||| ||||| ||||| |||||||| || ||    || || |||||||| ||  |||| || ||
gtatcctttccaagaatttcaaaatgtgtttgttcagcacttcctatatgttagcatctacataacagcgaaatacacaagtatcatttggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaaggaatt-agACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G05130.1 (Glycine max), 3'ss of exon 7
--------------------gagaaaaacctgtcaggtgtttttaactctcttaagacggtgtaaatg-ttagtgcttgcctcctgttagattgaa--------tggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT
                     | |      |||   ||  ||   |     |     |  | ||  |  | | |    |   | | | | ||  ||        || |||| ||||   ||  ||| |||||||||||||||||||||||| ||||| ||||| |||||||| || ||    || || |||||||| ||  |||| || ||
gtatcctttccaagaatttcaaaatgtgtttgttcagtacttcctatatgttagcatctatataggtaatcatttggcgtgccatataaaatcaaactattttatgttttccttaataaaggaatt-agACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCAT

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------------------------------------gagaaaaacctgtcaggtgttt-ttaactctcttaagacggtgtaaatgttagtgcttgcctcctgttagattgaatggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT
                                                         |   |    |  | |  |  || || | | | |||  |      |||| |      |||  ||    |        |  |||| ||||   |  || ||||||||||| |||||||||||||| ||||| || || |||||||| ||| |   |   |||||||| || || ||||| || ||
gtatccttctaaaaattcttaatccttagcaaacactagtttaaaacgattcttcaagcatactgtccttaaaatacttgtttatttttttataat--ctcaaatctagaaaattggatctaaatcatcctttt--tttccttaat-aaaccaatcagACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCAT

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S315_67V6.1 (Physcomitrella patens), 3'ss of exon 4
-------------gagaaaaacctgtcaggtgtttttaactctcttaagacggtgtaaatgttagtgcttgcct--cctgttagattgaatggtttctttaaccg--agacat--------------tcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTAC-CAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT
             |||   |  | || | |||  |     ||    | |  |  || |  |   | | |  | |  | |||     ||  ||   | | ||||||  ||  ||              |||||||||||||||||||||||||| ||  | ||| || |||| ||   |  |||  || ||   | |||||||    ||||| ||
gtaagtgccgagtgaggtgacgcggtgatgtgcataatggtccaagatgtggacgtgagagagggaggtgtctttgcttgtggtgatgtgtgacgtttgtaaccggcagggatgggtttggggtgaatcagACAAGAAGAATGAGAACAAGGAAGTAACGGTGGATAACTTCCTGGGCCACGAA-GCTGCGATTCAAGCCATCAGTCACTCCAT

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S552_1V6.1 (Physcomitrella patens), 3'ss of exon 7
-------------gagaaaaacctgtcaggtgtttttaactctcttaagacggtgtaaatgttagtgcttgcct--cctgttagattgaatggtttctttaaccg--agacat--------------tcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTAC-CAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT
             |||   |  | || | |||  |     ||    | |  |  || |  |  || | |  | |  | |||     ||  ||   | | ||||||  ||  ||              |||||||||||||||||||||||||| ||  | ||| || |||| ||   |  |||  || ||   | |||||||    ||||| ||
gtaagtgccgagtgaggtgacgcggtgatgtgcataatggtccaagatgtggacgtgagagagagaggtgtctttgcttgtggtgatgtgtgacgtttgtaaccggcagggatgggtttggggtgaatcagACAAGAAGAATGAGAACAAGGAAGTAACGGTGGATAACTTCCTGGGCCACGAA-GCTGCGATTCAAGCCATCAGTCACTCCAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37377074|gb|CF625109.1|CF625109
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|91878963|gb|EB408920.1|EB408920
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCCGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|91870587|gb|EB400969.1|EB400969
EST:     GGAGCTCCCACCTCACCGCTTGGCTGANATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|211164202|gb|FL365728.1|FL365728
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|21760122|gb|BQ635663.1|BQ635663
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|60345089|gb|DN212062.1|DN212062
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|9794549|gb|BE552857.1|BE552857
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGA
EST: gi|89252994|gb|DY624780.1|DY624780
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|32845833|gb|CD985514.1|CD985514
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|78109928|gb|DV528343.1|DV528343
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|60400269|gb|DN233076.1|DN233076
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|22521401|gb|BU080212.1|BU080212
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGA
EST: gi|78116468|gb|DV534855.1|DV534855
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|71761130|gb|DR959067.1|DR959067
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|21432147|gb|BQ547637.1|BQ547637
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|60400610|gb|DN233417.1|DN233417
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|60352136|gb|DN219109.1|DN219109
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|6973369|gb|AW438063.1|AW438063
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGCTGCTGGGAACGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|6973370|gb|AW438064.1|AW438064
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|60396637|gb|DN229505.1|DN229505
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|33104183|gb|CF064143.1|CF064143
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|60393905|gb|DN226775.1|DN226775
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|71441944|gb|DR822994.1|DR822994
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|76923128|gb|DV169344.1|DV169344
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|22546627|gb|BU098938.1|BU098938
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|60394081|gb|DN226951.1|DN226951
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|60397937|gb|DN230753.1|DN230753
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|23357695|gb|BU645344.1|BU645344
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCT
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCT
EST: gi|71445656|gb|DR826706.1|DR826706
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|91870563|gb|EB400947.1|EB400947
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|211043567|gb|FL332011.1|FL332011
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|74035433|gb|DT535921.1|DT535921
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|31405950|gb|CD484682.1|CD484682
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|76287732|gb|DV027300.1|DV027300
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|19822092|gb|BQ048116.1|BQ048116
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|76287731|gb|DV027299.1|DV027299
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|20301303|gb|BQ164246.1|BQ164246
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|60395705|gb|DN228575.1|DN228575
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|71445655|gb|DR826705.1|DR826705
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|22472706|gb|BU037186.1|BU037186
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTA
EST: gi|71758865|gb|DR956802.1|DR956802
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|37397100|gb|CF635845.1|CF635845
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|60401073|gb|DN233880.1|DN233880
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|71444626|gb|DR825676.1|DR825676
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|60342157|gb|DN209130.1|DN209130
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|22133615|gb|BQ833806.1|BQ833806
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|71444627|gb|DR825677.1|DR825677
EST:     GGAGCTCCCACCTCACCGCTTGGCTGAGATCAGGCGCTTCTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: gi|91870562|gb|EB400946.1|EB400946
EST:     GGAGCTCCCACCTCCCCGCTTGGCTGAAATCAGGCGCTTTTTCGAGGACT                         ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTTTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttagtgcttgcctcctgttagattgaatggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT
                                  ttctttaac  putative branch site 
                                 tttctttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gagaaaaacctgtcaggtgtttttaactctcttaagacggtgtaaatgttagtgcttgcctcctgttagattgaatggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC