1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgttcggctaactcatcctgttataccagttgatcttatatggctactcctgctgacagggtgcttaacctttttcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTGGTATCGATCTGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAG
species | Zea mays |
transcript | GRMZM2G137528_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|21391089|gb|BQ529138.1|BQ529138
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211434072|gb|FL284165.1|FL284165
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211436664|gb|FL284173.1|FL284173
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211436658|gb|FL284167.1|FL284167
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211434071|gb|FL284164.1|FL284164
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211436667|gb|FL284176.1|FL284176
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211436671|gb|FL284180.1|FL284180
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211436666|gb|FL284175.1|FL284175
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|32944271|gb|CF049090.1|CF049090
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|67024358|gb|CO453107.1|CO453107
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: G-CCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAA-TGAACTTGATGCGTEST: gi|211434065|gb|FL284158.1|FL284158
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211436659|gb|FL284168.1|FL284168
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211436668|gb|FL284177.1|FL284177
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|32941552|gb|CF046371.1|CF046371
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211436663|gb|FL284172.1|FL284172
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211434068|gb|FL284161.1|FL284161
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTACCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|6021527|gb|AW066455.1|AW066455
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|32945809|gb|CF050628.1|CF050628
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTEST: gi|211436665|gb|FL284174.1|FL284174
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTTTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|4776454|gb|AI665457.1|AI665457
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|60395128|gb|DN227997.1|DN227997
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|60352642|gb|DN219615.1|DN219615
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211431472|gb|FL284151.1|FL284151
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCADRTCAAGGAAAATGAACTTGATGCGEST: gi|211434062|gb|FL284155.1|FL284155
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCA-TTCAAGGAAAATGAACTTGATGCG
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211436669|gb|FL284178.1|FL284178
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211431471|gb|FL284150.1|FL284150
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211431470|gb|FL284149.1|FL284149
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|32839440|gb|CD979121.1|CD979121
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211436660|gb|FL284169.1|FL284169
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211434059|gb|FL284152.1|FL284152
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211436661|gb|FL284170.1|FL284170
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211434066|gb|FL284159.1|FL284159
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211434064|gb|FL284157.1|FL284157
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|213167947|gb|FM194936.1|FM194936
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTEST: gi|211434070|gb|FL284163.1|FL284163
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
ttgatcttatatggctactcctgctgacagggtgcttaacctttttcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTGGTATCGATCTGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAG
cttaacctttttcccc CT-rich tract
ttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcggctaactcatcctgttataccagttgatcttatatggctactcctgctgacagggtgcttaacctttttcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTGGTATCGATCTGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG