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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaaacacaatagatgatcatcattgtcaattttttatgcaataaatggtcatgactcctcaaacttgcagTGCTCCAACATATTTCTCACCAAAGACCAGGACATACGCCTTG

Basic information

species Zea mays
transcript GRMZM2G137118_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137118_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g36960.1 (Oryza sativa), 3'ss of exon 6
gtaagtgaaacacaatagatgatcatcattgtcaattttttatgcaataaatggtcatga-ctcctcaaacttgcagTGCTCCAACATATTTCTCACCAAAGACCAGGACATACGCCTTG
|||| |    || || |||| || |||||| ||  || ||||     || ||    ||   ||  ||| | |||||||||||||||||||||||||||||||| || || |||||||| |
gtaactt---cagaacagataat-atcattttctcttatttaattggtagatttcaatattcttgtcataattgcagTGCTCCAACATATTTCTCACCAAAGATCAAGATATACGCCTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatcattgtcaattttttatgcaataaatggtcatgactcctcaaacttgcagTGCTCCAACATATTTCTCACCAAAGACCAGGACATACGCCTTG
                                       ctcctca  CT-rich tract
          tcaattttttatgcaa  TA-rich tract